Search Results/Report

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The search parameters are: - Beamline: 18-ID
Number of Records: 922
Publication citations were last updated on 04/01/2025 from Web of Science©

Nicholas Dimakis, Grant Bunker, "APEX: Cross-Platform Analysis Program for EXAFS," J. Synchrotron Rad. 6, 274-275 (1998). Cited 4 times

T.C. Irving, "Bright prospects for biological non-crystalline diffraction," Nature Struct. Biol. 5 (8s), 648-650 (1998).

K. Zhang, G. Rosenbaum, G. Bunker, "Energy-Resolving X-ray Fluorescence Detection Using Synthetic Multilayers," J. Synchrotron Rad. 5, 1227-1234 (1998). Cited 16 times

N. Dimakis, M.-A. Al-Akhras, G. Bunker, "Rapid single- and multiple-scattering EXAFS Debye-Waller factor calculations on active sites of metalloproteins," J. Synchrotron Rad. 6, 266-267 (1999). Cited 11 times

A.M. Edwards, K. Zhang, C.E. Nordgren, J.K. Blasie, "Polarized XAS on vectorially oriented single monolayers of cytochrome c," J. Synchrotron Rad. 6, 411-413 (1999). Cited 2 times

V. James, J. Kearsley, T. Irving, Y. Amemiya, D. Cookson, "Using hair to screen for breast cancer," Nature 398, 33-34 (1999). Cited 76 times

G. Khelashvili, G. Bunker, "Practical regularization methods for analysis of EXAFS spectra," J. Synchrotron Rad. 6, 271-273 (1999). Cited 7 times

K. Zhang, G. Rosenbaum, G. Bunker, "Design and testing of a prototype multilayer analyzer X-ray fluorescence detector," J. Synchrotron Rad. 6, 220-221 (1999). Cited 10 times

Z. Zhong, D. Chapman, B. Bunker, G. Bunker, R. Fischetti, C. Segre, "A bent Laue analyzer for fluorescence EXAFS detection," J. Synchrotron Rad. 6, 212-214 (1999). Cited 46 times

Sanjoy Bhattacharya, "Structural changes accompanying removal of the myosin regularory light chain extension in drosophila: An x-ray diffraction study," Masters, University of Vermont, 2000.

Xingwang Fang, Kenneth Littrell, Yang Xiao-Jing, Stephen J. Henderson, Sonke Seifert, P. Thiyagarajan, Tao Pan, Tobin R. Sosnick, "Mg[superscript 2+]-Dependent Compaction and Folding of Yeast tRNAPhe and the Catalytic Domain of the B. subtilis RNase P RNA Determined by Small-Angle X-ray Scattering," Biochemistry-US 39, 11107-11113 (2000). Cited 101 times

Thomas C. Irving, Robert F. Fischeti, "Fibre Diffraction Using the BioCAT Facility at the Advanced Photon Source," Fibre Diffract. Rev. 9, 58-62 (2000).

T.C. Irving, R. Fischetti, G.B. Rosenbaum, G.B. Bunker, "Fiber diffraction using the BioCAT undulator beamline at the Advanced Photon Source," Nucl. Instrum. Methods A 448 (1-2), 250-254 (2000). DOI: 10.1016/S0168-9002(99)00732-9 Cited 19 times

T.C. Irving, J. Kohhilas, D. Perry, R. Fischetti, P.P. de Tombe, "Myofilament lattice spacing as a function of sarcomere length in isolated rat myocardium," Amer. J. Physiol. Heart. Circ. Physiol. 279, H2568-H2573 (2000).

T.C. Irving, D.W. Maughan, "In Vivo X-ray Diffraction of Indirect Flight Muscle from Drosophila melanogaster," Biophys. J. 78, 2511-2515 (2000). Cited 53 times

Ivan Ivanov, Gerd Rosenbaum, John Chrzas, Robert Fischetti, C.U. Segre, L.D. Chapman, "A robust cryogenic crystal design in use at the APS," AIP Conf. Proc. 521, 271 (2000). DOI: 10.1063/1.1291799 Cited 5 times

C. Karanfil, Z. Zhong, L.D. Chapman, R. Fischetti, G.B. Bunker, C.U. Segre, B.A. Bunker, "A bent Laue analyzer detection system for dilute fluorescence XAFS," AIP Conf. Proc. 521, 178 (2000). DOI: 10.1063/1.1291781 Cited 17 times

G. Khelashvili, "Regularization method and determination of structure of disordered materials," Ph.D., Illinois Institute of Technology, 2000.

Larry Kneller, "Hydration state of single cytochrome c monolayers on soft interfaces via neutron interferometry and results from a new fast time-slicing, high count-rate multi-element linear x-ray detector," Ph.D., University of Pennsylvania, 2000.

Andrew Miller, Joseph P.R. Orgel, Timothy Wess, "X-ray Studies on Biological Fibres," Fibre Diffract. Rev. 8, 27-31 (2000).

J.P.R. Orgel, "The molecular structure of collagen," Ph.D., University of Stirling, 2000.

N. Sahni, "Structure and function of Native and edited dystrophin rod," Ph.D., Illinois Institute of Technology, 2000.

Joseph Strzalka, "X-ray studies of Maquette Peptide monolayers," Ph.D., University of Pennsylvania, 2000.

Olivier Cazorla, Yiming Wu, Thomas C. Irving, Henk Granzier, "Titin-Based Modulation of Calcium Sensitivity of Active Tension in Mouse Skinned Cardiac Myocytes," Circ. Res. 88, 1028-1035 (2001). Cited 189 times

X.-W. Fang, B.L. Golden, K. Littrell, V. Shelton, P. Thiyagarajan, T. Pan, T.R. Sosnick, "The thermodynamic origin of the stability of a thermophilic ribozyme," Proc. Natl. Acad. Sci. USA 98 (8), 4355-4360 (2001). Cited 57 times

Pieter Glatzel, "X-ray Fluorescence Emission Following K Capture and 1s Photoionization of Mn and Fe in Various Chemical Environments," Ph.D., University of Hamburg, 2001.

Thomas Irving, Sanjoy Bhattacharya, Ivan Tesic, Jeff Moore, Gerrie Farman, Amanda Simcox, Jim Vigoreaux, David Maughan, "Changes in myofibrillar structure and function produced by N-terminal deletion of the regulatory light chain in Drosophila," J. Muscle Res. Cell M. 22, 675-678 (2001). Cited 19 times

Veronica James, "The importance of good images in using hair to screen for breast cancer," J. Med. Genet. 38, e16 (2001).

John P. Konhilas, "The molecular mechanisms of length-dependent activation in striated muscle," Ph.D., University of Illinois at Chicago, 2001.

Peter Meyer, Veronica J. James, "Experimental Confirmation of a Distinctive Diffraction Pattern in Hair from Women with Breast Cancer," J. Natl. Cancer I. 93 (11), 873-875 (2001). Cited 16 times

Juergen Mollenhauer, Carol Muehleman, Matthias Aurich, Giorgi Khelashvili, Thomas Irving, "Collagen fiber orientation from normal, degenerated and osteoarthritic cartilage as assessed through small angle x-ray diffraction," Trans. Ortho. Res. Soc. 26, 268 (2001).

Joseph P.R.O. Orgel, Andrew Miller, Thomas C. Irving, Robert F. Fischetti, Andrew P. Hammersley, Tim J. Wess, "The In Situ Supermolecular Structure of Type I Collagen," Structure 9, 1061-1069 (2001). Cited 254 times

Uwe Bergmann, Pieter Glatzel, Steven P. Cramer, "Bulk Sensitive XAS Characterization of Light Elements: From X-ray Raman Scattering to X-ray Raman Spectroscopy," Microchem. J. 71, 221-230 (2002). Cited 125 times

Uwe Bergmann, Philippe Wernet, Pieter Glatzel, M. Cavalleri, L.G.M. Pettersson, Anders Nilsson, S.P. Cramer, "X-ray Raman spectroscopy at the oxygen K edge of water and ice: Implications on local structure models," Phys. Rev. B 66 (092107), 092107-1-092107-4 (2002). Cited 105 times

B. Bleijlevens, "Activation and sensing of hydrogen in nature," Ph.D., University of Amsterdam, 2002.

Paul A. Del Rizzo, Yumin Bi, Stanley D. Dunn, Brian H. Shilton, "The 'Second Stalk' of Escherichia coli ATP Synthase: Structure of the Isolated Dimerization Domain," Biochemistry-US 41, 6875-6884 (2002). Cited 82 times

Michael DiDonato, Jingyan Zhang, Lawrence Que, Jr., Bibudhendra Sarkar, "Zinc Binding to the NH2-terminal Domain of the Wilson Disease Copper-transporting ATPase," J. Biol. Chem. 277 (16), 13409-13414 (2002). Cited 21 times

Nicholas Dimakis, Grant Bunker, "Group-fitted ab initio single- and multiple-scattering EXAFS Debye-Waller factors," Phys. Rev. B 65 (20), 201103-1-201103-4 (2002). Cited 23 times

Stephanie E. Gabelnick, "Metalloprotein Investigations Using Capillary Electrophoresis with X-ray Fluorescence Detection," Ph.D., University of Michigan, 2002.

P. Glatzel, U. Bergmann, W. Gu, H. Wang, S. Stepanov, B. Mandimutsira, C.G. Riordan, C.P. Horwitz, T. Collins, S.P. Cramer, "Electronic Structure of Ni Complexes by X-ray Resonance Raman Spectroscopy (Resonant Inelastic X-ray Scattering)," J. Am. Chem. Soc. 124 (33), 9668-9669 (2002). Cited 29 times

Pieter Glatzel, Lilian Jacquamet, Uwe Bergmann, Frank M.F. de Groot, Stephen P. Cramer, "Site-Selective EXAFS in Mixed-Valence Compounds Using High-Resolution Fluorescence Detection: A Study of Iron in Prussian Blue," Inorg. Chem. 41, 3121-3127 (2002). Cited 88 times

Aysel Golbahar-Agun, "Structural studies of mutant and wold type vitreoscilla hemoglobins using x-ray absorbtion fine structure spectroscopy," Ph.D., Illinois Institute of Technology, 2002.

H. Granzier, D. Labeit, Y. Wu, S. Labeit, "Titin as a Modular Spring: Emerging Mechanisms for Elasticity Control by Titin in Cardiac Physiology and Pathophysiology," J. Muscle Res. Cell M. 23 (5-6), 457-471 (2002). Cited 27 times

Veronica J. James, "Synchrotron fibre diffraction identifies and locates foetal collagenous breast tissue associated with breast carcinoma," J. Synchrotron Rad. 9, 71-76 (2002). Cited 7 times

Veronica J. James, B.E. Willis, "Molecular changes in skin predict predisposition to breast cancer," J. Med. Genet. 39, e1 (2002).

John P. Konhilas, Thomas C. Irving, Pieter P. de Tombe, "Frank-Starling law of the heart and the cellular mechanisms of length-dependent activation," Pflug. Arch. Eur. J. Phy. 445 (3), 305-310 (2002). Cited 82 times

John P. Konhilas, Thomas C. Irving, Pieter P. de Tombe, "Length-dependent activation in three striated muscle types of the rat," J. Physiol-London 544.1, 225-236 (2002). Cited 98 times

John P. Konhilas, Thomas C. Irving, Pieter P. de Tombe, "Myofilament Calcium Sensitivity in Skinned Rat Cardiac Trabeculae: Role of Interfilament Spacing," Circ. Res. 90, 59-65 (2002). Cited 117 times

Bryan A. Krantz, "Protein Folding: New Methods Unveil Rate-limiting Structures," Ph.D., University of Chicago, 2002.

Khalid Laaziri, Mark Sutton, P. Ghadirian, A.S. Scott, A.-J. Paradis, P.N. Tonin, W.D. Foulkes, "Is there a correlation between the structure of hair and breast cancer or BRCA1/2 mutations?," Phys. Med. Biol. 47, 1623-1632 (2002). Cited 10 times

Joseph P.R.O. Orgel, Andrew Miller, Thomas C. Irving, Tim J. Wess, "Recent insights into the three-dimensional molecular packing structure of native type I collagen," Fibre Diffract. Rev. 10, 40-49 (2002).

Lauren Parker, Amy Kendall, Gerald Stubbs, "Surface features of potato virus X from fiber diffraction," Virology 300 (2), 291-295 (2002). Cited 58 times

Walter C. Phillips, Alexander Stewart, Martin Stanton, Istvan Naday, Charles Ingersoll, "High-sensitivity CCD-based X-ray detector," J. Synchrotron Rad. 9, 36-43 (2002). Cited 45 times

Kathy Pieples, Grace Arteaga, R. John Solaro, Ingrid Grupp, John N. Lorenz, Greg P. Boivin, Ganapathy Jagatheesan, Erin Labitzke, Pieter P. deTombe, John P. Konhilas, Thomas C. Irving, David F. Wieczorek, "Tropomyosin 3 expression leads to hypercontractility and attenuates myofilament length-dependent Ca[superscript 2+] activation," Amer. J. Physiol. Heart. Circ. Physiol. 283, H1344-H1353 (2002).

Vittal K. Yachandra, "Structure of the manganese complex in photosystem II: Insights from x-ray spectroscopy," Phil. Trans. R. Soc. Lond. B 357, 1347-1358 (2002). Cited 66 times

Derek W. Yoder, "Physical Characterization of Manganese Catalase and its Halide-Bound Forms," Ph.D., University of Michigan, 2002.

H.A. Seifert III, "The resolving power of X -ray microtomography systems used for evaluating bone specimens," Ph.D., University of Michigan, 2003.

Hind A. Al-Khayat, Liam Hudson, Michael K. Reedy, Thomas C. Irving, John M. Squire, "Myosin Head Configuration in Relaxed Insect Flight Muscle: X-ray Modeled Resting Cross-Bridges in a Pre-Powerstroke State Are Poised for Actin Binding," Biophys. J. 85, 1063-1079 (2003). Cited 59 times

Uwe Bergmann, Henning Groenzin, Oliver C. Mullins, Pieter Glatzel, John Fetzer, S.P. Cramer, "Carbon K-edge X-ray Raman spectroscopy supports simple, yet powerful description of aromatic hydrocarbons and asphaltenes," Chem. Phys. Lett. 369 (1-2), 184-191 (2003). Cited 77 times

R. Fischetti, J. Rodi, A.D. Mirza, T.C. Irving, E. Kondrashkina, L. Makowski, "High resolution wide-angle x-ray scattering of protein solutions: Effect of beam dose on protein integrity," J. Synchrotron Rad. 10, 398-404 (2003). Cited 55 times

Norio Fukuda, Yiming Wu, Gerrie Farman, Thomas C. Irving, Henk Granzier, "Titin isoform variance and length dependence of activation in skinned bovine cardiac muscle," J. Physiol-London 51.1, 147-154 (2003). Cited 1 times

P. Glatzel, U. Bergmann, F.M.F. de Groot, S.P. Cramer, "Multiple excitations in the K fluorescence emission of Mn, Fe and Ni compounds," AIP Conference Proceedings, A. Bianconi, A. Marcelli, N. L. Saini, eds., 652, AIP Publishing Center, (2003), 250 - 255.

M.L. Gordon, D. Tulumello, G. Cooper, A.P. Hitchcock, P. Glatzel, O.C. Mullins, S.P. Cramer, U. Bergmann, "Inner-Shell Excitation Spectroscopy of Fused-Ring Aromatic Molecules by Electron Energy Loss and X-ray Raman Techniques," J. Phys. Chem. A 107 (41), 8512 -8520 (2003). Cited 37 times

H.E. Huxley, M. Reconditi, A. Stewart, T. Irving, "X-ray interference evidence concerning the range of crossbridge movement, and backbone contributions to the meridional pattern," Adv. Exp. Med. Biol. 538, 233-241 (2003). Cited 8 times

Veronica J. James, "Changes in the diffraction pattern of hair resulting from mechanical damage can occlude the changes that relate to breast cancer," Phys. Med. Biol. 48, L37-L41 (2003). Cited 7 times

Veronica J. James, "Response to P. Suortti et al.'s and K. D. Rogers et al.'s 'Comments on synchrotron fibre diffraction identifies and locates foetal collagenous breast tissue associated with breast carcinoma by V. J. James (2002). J. Synchrotron Rad. 9, 71-76'," J. Synchrotron Rad. 10, 200-201 (2003).

Veronica J. James, "Fibre diffraction from a single hair can provide an early non-invasive test for colon cancer," Med. Sci. Mon. 9 (8), MT79-MT84 (2003).

Veronica J. James, "The traps and pitfalls inherent in the correlation of changes in the fibre diffraction pattern of hair with breast cancer," Phys. Med. Biol. 48 (2), L5-L9 (2003). Cited 11 times

Veronica James, "False-Positive Results in Studies of Changes in Fiber Diffraction of Hair from Patients with Breast Cancer May Not Be False," J. Natl. Cancer I. 95 (2), 170-171 (2003). Cited 12 times

C. Karanfil, "Bent Crystal X-Ray Optics For Synchrotron Radiation Research," Ph.D., Illinois Institute of Technology, 2003.

Oded Kleifeld, Anatoly Frenkel, Jan M.L. Martin, Irit Sagi, "Active site electronic structure and dynamics during metalloenzyme catalysis," Nature Struct. Biol. 10 (2), 98-103 (2003). Cited 97 times

John P. Konhilas, Thomas C. Irving, Beata M. Wolska, Eias E. Jweied, Anne F. Martin, R. John Solaro, Pieter P. de Tomb, "Troponin I in the murine myocardium: influence on length-dependent activation and interfilament spacing," J. Physiol-London 547 (3), 951-961 (2003). Cited 124 times

Rumiana Koynova, Robert C. MacDonald, "Cationic O-ethylphosphatidylcholines and their lipoplexes: phase behavior aspects, structural organization and morphology," BBA-Biomembranes 1613, 39-48 (2003). Cited 38 times

R. Koynova, R.C. MacDonald, "Mixtures of Cationic Lipid O-Ethylphosphatidylcholine with Membrane Lipids and DNA: Phase Diagrams," Biophys. J. 85, 2449-2465 (2003). Cited 45 times

Shinwoo Lee, "An XAFS Study of Zn and Cd Sorption Mechanisms on Montmorillonite and Hydrous Ferric Oxide Over Extended Reaction Times," Ph.D., Illinois Institute of Technology, 2003.

Raquel L. Lieberman, Deepak B. Shrestha, Peter E. Doan, Brian M. Hoffman, Timothy L. Stemmler, Amy C. Rosenzweig, "Bioinorganic Chemistry Special Feature: Purified particulate methane monooxygenase from Methylococcus capsulatus (Bath) is a dimer with both mononuclear copper and a copper-containing cluster," Proc. Natl. Acad. Sci. USA 100, 3820-3825 (2003). Cited 130 times

K. Lu, J. Jacob, P. Thiyagarajan, V.P. Conticello, D.G. Lynn, "Exploiting Amyloid Fibril Lamination for Nanotube Self-Assembly," J. Am. Chem. Soc. 125, 6391-6393 (2003). Cited 329 times

David G. Lynn, James P. Snyder, Ami S. Lakdawala, Jijun Dong, Kun Lu, "Conformational Evolution: The Wiggling of Peptides into Amyloid," Structure 11, 242-242 (2003). Cited 3 times

S. Mehboob, J. Jacob, M. May, L. Kotula, P. Thiyagarajan, M.E. Johnson, L.W.-M. Fung, "Structural Analysis of the [alpha]N-Terminal Region of Erythroid and Nonerythroid Spectrins by Small-Angle X-ray Scattering," Biochemistry-US 42 (49), 14702-14710 (2003). Cited 23 times

J. Mollenhauer, M. Aurich, C. Muehleman, T. Irving, "X-ray diffraction of the molecular structure of cartilage," Connect Tissue Res. 44 (5), 201-207 (2003). Cited 45 times

M. Tom Sebulsky, Brian H. Shilton, Craig D. Speziali, David E. Heinrichs, "The Role of FhuD2 in Iron(III)-Hydroxamate Transport in Staphylococcus aureus," J. Biol. Chem. 278 (50), 49890-49900 (2003). Cited 70 times

J.M. Squire, H.A. Al-Khayat, J.J. Harford, L. Hudson, T.C. Irving, C. Knupp, N.S. Mok, M.K. Reedy, "Myosin filament structure and myosin crossbridge dynamics in fish and insect muscles," Adv. Exp. Med. Biol. 538, 251-266 (2003). Cited 7 times

J.M. Squire, H.A. Al-Khayat, J.J. Harford, L. Hudson, T.C. Irving, C. Knupp, M.K. Reedy, "Modelling muscle motor conformations using low-angle X-ray diffraction," IEE Proc.-Nanobiotechnology 150 (3), 103-110 (2003).

P.G. Telmer, B.H. Shilton, "Insights into the Conformational Equilibria of Maltose-binding Protein by Analysis of High Affinity Mutants," J. Biol. Chem. 278 (36), 34555-34567 (2003). Cited 84 times

Daniel Tobin, "XAS Investigation of Zn Metalloproteins and Enzymes," Ph.D., University of Michigan, 2003.

Bin Wang, Steven L. Alam, Hemmo H. Meyer, Marielle Payne, Timothy L. Stemmler, Darrell R. Davis, Wesley I. Sundquist, "Structure and Ubiquitin Interactions of the Conserved Zinc Finger Domain of Np14," J. Biol. Chem. 278 (22), 20225-20234 (2003). Cited 130 times

H.A. Al-Khayat, L. Hudson, M.K. Reedy, T.C. Irving, J.M. Squire, "Modelling oriented macromolecular assemblies from low-angle x-ray fibre diffraction data with the program MOVIE: Insect flight muscle as an example," Fibre Diffract. Rev. 12, 50-60 (2004).

David S. Auld, "Catalytic mechanisms for metallopeptidases," Handbook of Proteolytic Enzymes, A.J. Barrett, N.D. Rawlings, J.F. Woessner, eds., Academic Press, 2004, 268 - 289.

David S. Auld, "Carboxypeptidase A," Handbook of Proteolytic Enzymes, A.J. Barrett, N.D. Rawlings, J.F. Woessner, eds., Academic Press, 2004, 812 - 821.

U. Bergmann, H. Groenzin, O.C. Mullins, P. Glatzel, J. Fetzer, P. Cramer, "X-ray Raman spectroscopy - A new tool to study local structure of aromatic hydrocarbons and asphaltenes," Petrol. Sci.Tech. 22, 863-875 (2004). Cited 25 times

Nicholas Dimakis, Grant Bunker, "XAFS Debye-Waller factors for Zn metalloproteins," Phys. Rev. B 70, 195114-1-195114-12 (2004). Cited 21 times

D. Dodatko, A.A. Fedorov, M. Grynberg, Y. Patskovsky, D.A. Rozwarski, L. Jaroszewski, E. Aronoff-Spencer, E. Kondrashkina, T.C. Irving, A. Godzik, S.C. Almo, "Crystal Structure of the Actin-binding domain of the Cyclase Associated Protein," Biochemistry-US 43 (33), 10628-10641 (2004). Cited 44 times

Gerrie P. Farman, "Structural Basis of Calcium Sensitivity in Striated Muscle," Ph.D., Illinois Institute of Technology, 2004.

R.F. Fischetti, D.J. Rodi, D.B. Gore, L. Makowski, "Wide-angle x-ray solution scattering as a probe of ligand-induced conformational changes in proteins," Chem. Biol. 11, 1431-1443 (2004). Cited 44 times

R. Fischetti, S. Stepanov, G. Rosenbaum, R. Barrea, E. Black, D. Gore, R. Heurich, E. Kondrashkina, A.J. Kropf, S. Wang, K. Zhang, T.C. Irving, G.B. Bunker, "The BioCAT undulator beamline 18ID: A facility for biological non-crystalline diffraction and x-ray absorption spectroscopy at the APS," J. Synchrotron Rad. 11, 399-405 (2004). DOI: 10.1107/S0909049504016760 Cited 132 times

N. Fukuda, H. Granzier, "Role of the giant elastic protein titin in the Frank-Starling mechanism of the heart," Curr. Vas. Pharmacol. 2, 135-139 (2004). Cited 41 times

P. Glatzel, U. Bergmann, J. Yano, H. Visser, J.H. Robblee, W. Gu, M.F. de Groot, G. Christou, V.L. Pecoraro, S.P. Cramer, V.K. Yachandra, "The Electronic Structure of Mn in Oxides, Coordination Complexes, and the Oxygen-Evolving Complex of Photosystem II Studied by Resonant Inelastic X-ray Scattering," J. Am. Chem. Soc. 126 (32), 9946-9959 (2004). Cited 166 times

W.M. Heijboer, P. Glatzel, K.R. Sawant, R.F. Lobo, U. Bergmann, R.A. Barrea, D.C. Koningsberger, B.M. Weckhuysen, F.M.F. de Groot, "K[superscript beta]-Detected XANES of Framework-Substituted FeZSM-5 Zeolites," J. Phys. Chem. B 108 (28), 10002-10011 (2004). Cited 76 times

Y. Hochman, X.-M. Gong, Y. Lifshitz, G. Bunker, C. Carmeli, "EXAFS analysis of the structure of Ca and Ca-nucleotides bound to chloroplasts ATP synthase," BBA-Bioenergetics 1658 (Suppl.1) (1-2), 113 (2004).

Hugh E. Huxley, "Recent X-ray diffraction studies of muscle contraction and their implications," Phil. Trans. R. Soc. Lond. B 359 (1452), 1879-1556 (2004). Cited 23 times

J. Jacob, B. Krantz, R.S. Dothager, P. Thiyagarajan, T.R. Sosnick, "Early Collapse is not an Obligate Step in Protein Folding," J. Mol. Biol. 338 (2), 369-382 (2004). Cited 114 times

J.E. Kohn, I.S. Millett, J. Jacob, B. Zagrovic, T.M. Dillon, N. Cingel, R.S. Dothager, S. Seifert, P. Thiyagarajan, T.R. Sosnick, M.Z. Hasan, V.S. Pande, I. Ruczinski, S. Doniach, K.W. Plaxco, "Random-Coil Behavior and the Dimensions of Chemically Unfolded Proteins," Proc. Natl. Acad. Sci. USA 101 (34), 12491-12496 (2004). Cited 568 times

Rumiana Koynova, Robert C. MacDonald, "Columnar DNA superlattices in lamellar O-ethylphosphatidylcholine lipoplexes. Mechanism of the gel-liquid crystalline lipid phase transition," Nano Lett. 4 (8), 1475-1479 (2004). DOI: 10.1021/nl049191k Cited 34 times

Rumiana Koynova, Howard S. Rosenzweig, Li Wang, Michael Wasielewski, Robert C. MacDonald, "Novel Fluorescent Cationic Phospholipid, O-4-Napthylimido-1-Butyl-DOPC, Exhibits Unusual Foam Morphology, Forms Hexagonal and Cubic Phases in Mixtures, and Transfects DNA," Chem. Phys. Lipids 129 (2), 184-194 (2004). DOI: 10.1016/j.chemphyslip.2004.01.003 Cited 8 times

Jun Liu, Mary C. Reedy, Yale E. Goldman, Clara Franzini-Armstrong, Hiroyuki Sasaki, Richard T. Tregear, Carmen Lucaveche, Hanspeter Winkler, Bruce A.J. Baumann, John M. Squire, Thomas C. Irving, Michael K. Reedy, Kenneth A. Taylor, "Electron tomography of fast frozen, stretched rigor fibers reveals elastic distortions in the myosin crossbridges," J. Struct. Biol. 147 (3), 268-282 (2004). Cited 37 times

V. Lombardi, G. Piazzesi, M. Reconditi, M. Linari, L. Lucii, A. Stewart, Y.-B. Sun, P. Boesecke, T. Narayanan, T. Irving, M. Irving, "X-ray diffraction studies of the contractile mechanism in single muscle fibres," Phil. Trans. R. Soc. Lond. B 359 (1452), 1883-1893 (2004). Cited 27 times

Kun Lu, Vincent P. Conticello, David G. Lynn, "Templating Colloidal Metal Nanoparticle Assemblies: Use of the A[beta] Amyloid Peptide Nanotube," Symposium V, Proteins as Materials, V.P. Conticello, A. Chilkoti, E. Atkins, D.G. Lynn, eds., 826E, Mater. Res. Soc. (2004), V1.6.

E. Mathew, A. Mirza, N. Menhart, "Liquid-chromatography-coupled SAXS for accurate sizing of aggregating proteins," J. Synchrotron Rad. 11, 314-318 (2004). Cited 114 times

Craig P. McClure, "X-ray Absorption and X-ray Fluorescence Studies of Metalloproteins," Ph.D., University of Michigan, 2004.

A.A. Mikhaylova, "Iron biomineralization of brain tissue and neurodegenerative disorders," Ph.D., University of Florida, 2004.

Bradley M. Palmer, Bradley K. McConnell, Guo Hua Li, Christine E. Seidman, J.G. Seidman, Thomas C. Irving, Norman R. Alpert, David W. Maughan, "Reduced cross-bridge dependent stiffness of skinned myocardium from mice lacking cardiac myosin binding protein-C," Mol. Cell Biochem. 263, 73-80 (2004). Cited 33 times

Rekha Pattanayek, Jimin Wang, Tetsuya Mori, Yao Xu, Carl Hirschie Johnson, Martin Egli, "Visualizing a Circadian Clock Protein: Crystal Structure of KaiC and Functional Insights," Mol. Cell 15, 375-388 (2004). Cited 151 times

Ursula A. Perez-Salas, Prashanth Rangan, Susan Krueger, R.M. Briber, D. Thirumalai, Sarah A. Woodson, "Compaction of a Bacterial Group I Ribozyme Coincides with the Assembly of Core Helices," Biochemistry-US 43 (6), 1746-1753 (2004). DOI: 10.1021/bi035642o Cited 50 times

H. Rasgado-Flores, S.R. Taylor, C. Pena-Rasgado, J. Orgel, H. Gonzalez-Serratos, "Muscle contraction and cell volume changes in skeletal muscle," J. Muscle Res. Cell M. 25 (8), 592-595 (2004). Cited 4 times

Massimo Reconditi, Marco Linari, Leonardo Lucii, Alex Stewart, Yin-Biao Sun, Peter Boesecke, Theyencheri Narayanan, Robert F. Fischetti, Tom Irving, Gabriella Piazzesi, Malcolm Irving, Vincenzo Lombardi, "The myosin motor in muscle generates a smaller and slower working stroke at higher load," Nature 428 (6982), 578-581 (2004). Cited 162 times

T. Ressler, J.A. van Bokhoven, G. Knop-Gericke, F.M.F. de Groot, "Time-Resolved X-ray Absorption Spectroscopy Methods," In-situ Spectroscopy of Catalysis, B. M. Weckhuysen, ed., American Scientific Publishers, 2004, 107 - 122.

Kenneth Sauer, Vittal K. Yachandra, "The water-oxidation complex in photosynthesis," BBA-Bioenergetics 1655, 140-148 (2004). Cited 58 times

T.M. Schmid, J. Li, C. Muehleman, M. Wimmer, T.C. Irving, "Cartilage Compression Changes Collagen Fiber Orientation As Measured By Small Angle X-Ray Diffraction," Transactions of the Orthopedic Research Society, 29, Orthopedic Research Society (2004), Paper 230.

M. Tom Sebulsky, Craig D. Speziali, Brian H. Shilton, David R. Edgell, "FhuD1, a Ferric Hydroxamate-binding Lipoprotein in Staphylococcus aureus - A case of gene duplication and lateral transfer," J. Biol. Chem. 279 (53), 53152-53159 (2004). Cited 55 times

Firouzeh Tannazi, "Studies of heterogeneous samples and material composition by fluorescence XAFS," Ph.D., Illinois Institute of Technology, 2004.

Yury S. Tarahovsky, Rumiana Koynova, Robert C. MacDonald, "DNA release from lipoplexes by anionic lipids: correlation with lipid mesomorphism, interfacial curvature, and membrane fusion," Biophys. J. 87 (2), 1054-1064 (2004). DOI: 10.1529/biophysj.104.042895 Cited 88 times

D. Vigil, D.K. Blumenthal, S. Brown, S.S. Taylor, J. Trewhella, "Differential Effects of Substrate on Type I and Type II PKA Holoenzyme Dissociation," Biochemistry-US 43, 5629-5636 (2004). Cited 50 times

D. Vigil, D.K. Blumenthal, W.T. Heller, S. Brown, J.M. Canaves, S.S. Taylor, J. Trewhella, "Conformational Differences Among Solution Structures of the Type I[alpha], II[alpha], and II[beta] Protein Kinase A Regulatory Subunit Homodimers: Role of the Linker Regions," J. Mol. Biol. 337 (5), 1183-1194 (2004). Cited 50 times

Tsu-Chien Weng, "X-ray absorption spectroscopy studies on redox-active manganese," Ph.D., University of Michigan, 2004.

T.-C. Weng, W.-Y. Hiseh, E.S. Uffelman, S.W. Gordon-Wylie, T.J. Collins, V.L. Pecoraro, J.E. Penner-Hahn, "XANES Evidence Against a Manganyl Species in the S[subscript 3] State of the Oxygen-Evolving Complex," J. Am. Chem. Soc. 126 (26), 8070-8071 (2004). Cited 58 times

Ph. Wernet, D. Nordlund, U. Bergmann, M. Cavalleri, M. Odelius, H. Ogasawara, L.A. Naslund, T.K. Hirsch, L. Ojamäe, P. Glatzel, L.G.M. Pettersson, A. Nilsson, "The Structure of the First Coordination Shell in Liquid Water," Science 304, 995-999 (2004). Cited 1245 times

Yao Xu, Tetsuya Mori, Rekha Pattanayek, Sabuj Pattanayek, Martin Egli, Carl H. Johnson, "Identification of key phosphorylation sites in the circadian clock protein KaiC by crystallographic and mutagenetic analyses," Proc. Natl. Acad. Sci. USA 101 (38), 13933-13938 (2004). Cited 118 times

K. Zhang, R. Lui, T. Irving, D.S. Auld, "A versatile rapid-mixing and flow device for X-ray absorption spectroscopy," J. Synchrotron Rad. 11 (2), 204-208 (2004). Cited 6 times

K. Zhang, G. Rosenbaum, R. Liu, C. Liu, C. Carmeli, G. Bunker, D. Fischer, "Development of multilayer analyzer array detectors for x-ray fluorescence at the third generation synchrotron source," AIP Conf. Proc., 705, AIP (2004), 957 - 960.

F.M.F. de Groot, A. Knop-Gericke, T. Ressler, "X-ray Absorption Near Edge Spectroscopy," In-situ Spectroscopy of Catalysis, B. M. Weckhuysen, ed., American Scientific Publishers, 2004, 123 - 144.

Nathan J. Baird, Eric Westhof, Hong Qin, Tao Pan, Tobin R. Sosnick, "Structure of a Folding Intermediate Reveals the Interplay Between Core and Peripheral Elements in RNA Folding," J. Mol. Biol. 352 (3), 712-722 (2005). Cited 50 times

John R. Bargar, Bradley M. Tebo, Uwe Bergmann, Samuel M. Webb, Pieter Glatzel, Van Q. Chiu, Mario Villalobos, "Biotic and abiotic products of Mn(II) oxidation by spores of the marine Bacillus sp. strain SG-1," Am. Mineral. 90 (1), 143-154 (2005). Cited 242 times

R.A. Barrea, R. Fischetti, S. Stepanov, G. Rosenbaum, E. Kondrashkina, G.B. Bunker, E. Black, K. Zhang, D. Gore, R. Heurich, M. Vukonich, C. Karanfil, A.J. Kropf, S. Wang, T.C. Irving, "Biological XAFS at the BioCAT Undulator Beamline 18ID at the APS," Phys. Scripta. T115, 867-869 (2005). Cited 14 times

Grant Bunker, Ncholas Dimakis, Gocha Khelashvili, "New methods for EXAFS analysis in structural genomics," J. Synchrotron Rad. 12 (1), 53-56 (2005). Cited 9 times

G. Caliskan, C. Hyeon, U. Perez-Salas, R.M. Briber, S. A. Woodson, D. Thirumalai, "Persistence Length Changes Dramatically as RNA Folds," Phys. Rev. Lett. 95 (26), 268303-1-268303-4 (2005). Cited 67 times

Soma Chattopadhyay, Deniz Erdemir, James M.B. Evans, Jan Ilavsky, Heinz Amenitsch, Carlo U. Segre, Allan S. Myerson, "SAXS Study of the Nucleation of Glycine Crystals from a Supersaturated Solution," Cryst. Growth Des. 5 (2), 523-527 (2005). DOI: 10.1021/cg0497344 Cited 126 times

Seema Chauhan, Gokhan Caliskan, Robert M. Briber, Ursula Perez-Salas, Prashanth Rangan, D. Thirumalai, Sarah A. Woodson, "RNA Tertiary Interactions Mediate Native Collapse of a Bacterial Group I Ribozyme," J. Mol. Biol. 353 (5), 1199-1209 (2005). Cited 50 times

J.F. Collingwood, A. Mikhaylova, M.R. Davidson, C. Batich, W.J. Streit, T. Eskin, J. Terry, R. Barrea, R.S. Underhill, J. Dobson, "High-resolution x-ray absorption spectroscopy studies of metal compounds in neurodegenerative brain tissue," Journal of Physics: Conference Series, 17, Institute of Physics Publishing (2005), 54 - 60.

J.F. Collingwood, A. Mikhaylova, M. Davidson, C. Batich, W.J. Streit, J. Terry, J. Dobson, "In-situ Characterization and Mapping of Iron Compounds in Alzheimer’s Tissue," J. Alzheimers Dis. 7 (4), 267-272 (2005). Cited 100 times

M. Dickinson, G. Farman, M. Frye, T. Bekyarova, D. Gore, D. Maughan, T. Irving, "Molecular dynamics of cyclically contracting insect flight muscle in vivo," Nature 433 (7023), 330-333 (2005). Cited 72 times

N. Dimakis, G. Bunker, "Initial Results of the One-Dimensional XAFS Debye-Waller Models for Active Sites of Cu Histidine and Cystein Metalloproteins," Phys. Scripta. T115, 175-178 (2005). Cited 2 times

N. Dimakis, G. Bunker, "3D Molecular Graphical User Interface Add-On for Analysis Program for EXAFS: A New Prospect," Phys. Scripta. T115, 226-228 (2005).

Christian J. Doonan, Limei Zhang, Charles G. Young, Simon J. George, Aniruddha Deb, Uwe Bergmann, Graham N. George, Stephen P. Cramer, "High-Resolution X-ray Emission Spectroscopy of Molybdenum Compounds," Inorg. Chem. 44 (8), 2579-2581 (2005). DOI: 10.1021/ic050129f Cited 21 times

Michaeleen Doucleff, Baoyu Chen, Ann E. Maris, David E. Wemmer, Elena Kondrashkina, B. Tracy Nixon, "Negative Regulation of AAA+ ATPase Assembly by Two Component Receiver Domains: A Transcription Activation Mechanism that is Conserved in Mesophilic and Extremely Hyperthermophilic Bacteria," J. Mol. Biol. 353 (2), 242-255 (2005). Cited 53 times

Norio Fukuda, Yiming Wu, Gerrie Farman, Thomas C. Irving, Henk Granzier, "Titin-based modulation of active tension and interfilament lattice spacing in skinned rat cardiac muscle," Pflug. Arch. Eur. J. Phy. 449 (5), 449-457 (2005). Cited 72 times

Bruce C. Garrett, David A. Dixon, Donald M. Camaioni, Daniel M. Chipman, Mark A. Johnson, Charles D. Jonah, Gregory A. Kimmel, John H. Miller, Thomas N. Rescigno, Peter J. Rossky, Sotiris S. Xantheas, Steven D. Colson, Allan H. Laufer, Douglas Ray, Paul F. Barbara, David M. Bartels, Kurt H. Becker, Kit H. Bowen, Stephen E. Bradforth, Ian Carmichael, James V. Coe, L. Rene Corrales, James P. Cowin, Michel Dupuis, Kenneth B. Eisenthal, James A. Franz, Maciej S. Gutowski, Kenneth D. Jordan, Bruce D. Kay, Jay A. LaVerne, Sergei V. Lymar, Theodore E. Madey, C. William McCurdy, Dan Meisel, Shaul Mukamel, Anders R. Nilsson, Thomas M. Orlando, Nikolay G. Petrik, Simon M. Pimblott, James R. Rustad, Gregory K. Schenter, Sherwin J. Singer, Andrei Tokmakoff, Lai-Sheng Wang, Curt Wittig, Timothy S. Zwier, "Role of Water in Electron-Initiated Processes and Radical Chemistry: Issues and Scientific Advances," Chem. Rev. 105 (1), 355-389 (2005). DOI: 10.1021/cr030453x Cited 540 times

P. Glatzel, U. Bergmann, "High resolution 1s core hole x-ray spectroscopy in 3d transition metal complexes—Electronic and Structural Information," Coordin. Chem. Rev. 249 (1-2), 65-95 (2005). DOI: 10.1016/j.ccr.2004.04.011 Cited 812 times

P. Glatzel, U. Bergmann, F.M.F. de Groot, B.M. Weckhuysen, S.P. Cramer, "A Study of Transition Metal K Absorption PreEdges by Resonant Inelastic XRay Scattering RIXS," Phys. Scripta. T115, 1032-1034 (2005). Cited 7 times

P. Glatzel, F.M.F. de Groot, O. Manoilova, D. Grandjean, B.M. Weckhuysen, U. Bergmann, R. Barrea, "Range-extended EXAFS at the L edge of rare earths using high-energy-resolution fluorescence detection: A study of La in LaOCl," Phys. Rev. B 72 (1), 014117-1-014117-7 (2005). Cited 47 times

Pieter Glatzel, Junko Yano, Uwe Bergmann, Hendrik Visser, John H. Robblee, Weiwei Gu, Frank M.F. de Groot, Stephen P. Cramer, Vittal K. Yachandra, "Resonant inelastic X-ray scattering (RIXS) spectroscopy at the Mn K absorption pre-edge—a direct probe of the 3d orbitals," J. Phys. Chem. Solids 66 (12), 2163-2167 (2005). Cited 28 times

P. Glatzel, J. Yano, H. Visser, J.H. Robblee, K. Sauer, S.P. Cramer, U. Bergmann, V.K. Yachandra, "The Electronic Structure of the Mn[subscript 4]Ca Cluster," Photosynthesis: Fundamental Aspects to Global Perspectives, D. Bruce, A Van der Est, eds., 1, ACG Publishing (2005), 282 - 283.

W.M. Heijboer, D.C. Koningsberger, B.M. Weckhuysen, F.M.F. de Groot, "New frontiers in X-ray spectroscopy in heterogeneous catalysis: Using Fe/ZSM-5 as test-system," Catal. Today 110 (3-4), 228-238 (2005). DOI: 10.1016/j.cattod.2005.09.038 Cited 37 times

T. Irving, "X-ray diffraction of indirect flight muscle from Drosohila in vivo," Insect Flight Muscle Inside and Out, Jim Vigoreaux, Landes Bioscience, 2005, 197 - 213.

Veronica James, Gary Cornio, Terry Robertson, Nichole Dutton, Danka Halas, Alexandra Boyd, Jacqueline Bentel, John Papadimitriou, "Early diagnosis of breast cancer by hair diffraction," Int. J. Cancer 114 (6), 969-972 (2005). DOI: 10.1002/ijc.20824 Cited 17 times

Veronica J. James, Jill C. Richardson, Terry A. Robertson, John M. Papadimitriou, Nichole S. Dutton, Moira A.L. Maley, Lev M. Berstein, Olga E. Lantseva, Ralph N. Martins, "Fibre diffraction of hair can provide a screening test for Alzheimer’s Disease: a human and animal model study," Med. Sci. Mon. 11 (2), CR53-CR57 (2005). Cited 7 times

Srinivas Janaswamy, Rengaswami Chandrasekaran, "Cation-induced polymorphism in iota-carrageenan," Carbohyd. Polym. 60 (4), 499-505 (2005). DOI: 10.1016/j.carbpol.2005.03.013 Cited 17 times

Rumiana Koynova, Li Wang, Yury Tarahovsky, Robert C. MacDonald, "Lipid phase control of DNA delivery," Bioconjugate Chem. 16 (6), 1335-1339 (2005). DOI: 10.1021/bc050226x Cited 68 times

Julia Kraineva, R. Aravinda Narayanan, Elena Kondrashkina, Pappannan Thiyagarajan, Roland Winter, "Kinetics of Lamellar-to-Cubic and Intercubic Phase Transitions of Pure and Cytochrome c Containing Monoolein Dispersions Monitored by Time-Resolved Small-Angle X-ray Diffraction," Langmuir 21 (8), 3559-3571 (2005). Cited 57 times

Kristi L. Lazar, Helene Miller-Auer, Godfrey S. Getz, Joseph P.R.O. Orgel, Stephen C. Meredith, "Helix-Turn-Helix Peptides That Form [alpha]-Helical Fibrils: Turn Sequences Drive Fibril Structure," Biochemistry-US 44 (38), 12681-12689 (2005). DOI: 10.1021/bi0509705 Cited 53 times

Shinwoo Lee, Paul R. Anderson, "EXAFS study of Zn sorption mechanisms on hydrous ferric oxide over extended reaction time," J. Colloid Interf. Sci. 286 (1), 82-89 (2005). Cited 34 times

R.L. Lieberman, "Biophysical and structural characterization of particulate methane monooxygenase from Methylococcus capsulatus (Bath)," Ph.D., Northwestern University, 2005.

Mark S. Miller, Bradley M. Palmer, Stuart Ruch, Lisa A. Martin, Gerrie P. Farman, Yuan Wang, Jeffrey Robbins, Thomas C. Irving, David W. Maughan, "The Essential Light Chain N-terminal Extension Alters Force and Fiber Kinetics in Mouse Cardiac Muscle," J. Biol. Chem. 280 (41), 34427-34434 (2005). Cited 29 times

Lars-Ake Naslund, David C. Edwards, Philippe Wernet, Uwe Bergmann, Hirohito Ogasawara, Lars G.M. Pettersson, Satish Myneni, Anders Nilsso, "X-ray Absorption Spectroscopy Study of the Hydrogen Bond Network in the Bulk Water of Aqueous Solutions," J. Phys. Chem. A 109 (27), 5995-6002 (2005). Cited 150 times

L.-A. Naslund, J. Luning, Y. Ufuktepe, H. Ogasawara, Ph. Wernet, U. Bergmann, L.G.M. Pettersson, A. Nilsson, "X-ray Absorption Spectroscopy Measurements of Liquid Water," J. Phys. Chem. B 109 (28), 13835-13839 (2005). Cited 118 times

A. Nilsson, Ph. Wernet, D. Nordlund, U. Bergmann, M. Cavalleri, M. Odelius, H. Ogasawara, L.-A. Naslund, T.K. Hirsch, L. Ojamäe, P. Glatzel, L.G.M. Pettersson, "Comment on 'Energetics of Hydrogen Bond Network Rearrangements in Liquid Water'," Science 308 (5723), 793a (2005). Cited 95 times

B. Tracy Nixon, Hemant P. Yennawar, Michaeleen Doucleff, Jeffrey G. Pelton, David E. Wemmer, Susan Krueger, Elena Kondrashkina, "SAS Solution Structures of the Apo and Mg[superscript 2+]/BeF[subscript 3][superscript-]-Bound Receiver Domain of DctD from Sinorhizobium meliloti," Biochemistry-US 44 (42), 13962-13969 (2005). DOI: 10.1021/bi051129u Cited 10 times

Kanji Oshima, Yasunori Takezawa, Yasunobu Sugimoto, Thomas Irving, Katsuzo Wakabayashi, "Intensity analysis of myosin-based x-ray meridional reflections from live skeletal muscles in relaxed and contracting states," Fibre Diffract. Rev. 13, 23-30 (2005).

Lauren Parker, Amy Kendall, P.H. Berger, P.J. Shiel, Gerald Stubbs, "Wheat streak mosaic virus—Structural parameters for a Potyvirus," Virology 340 (1), 64-69 (2005). Cited 9 times

M. Reconditi, M. Linari, L. Lucii, A. Stewart, Y.-B. Sun, T. Narayanan, T. Irving, G. Piazzesi, T. Irving, V. Lombardi, "Structure-Function Relation of the Myosin Motor in Striated Muscle," Ann. NY Acad. Sci. 1047, 232-247 (2005). Cited 15 times

K. Sauer, J. Yano, R.M. Cinco, J. Messinger, V.K. Yachandra, "Modeling the Mn[subscript 4]Ca cluster of the water-oxidizing complex of PS II," Fundamental Aspects to Global Perspectives, A. van der Est, D. Bruce, eds., Alliance Communications Group Publishing, 2005, 363 - 364.

Kenneth Sauer, Junko Yano, Vittal K. Yachandra, "X-ray spectroscopy of the Mn[subscript 4]Ca cluster in the water-oxidation complex of Photosystem II," Photosyn. Res. 85 (1), 73-86 (2005). Cited 46 times

J.M. Squire, C. Knupp, M. Roessle, H.A. Al-Khayat, T.C. Irving, F. Eakins, N.-S. Mok, J.J. Harford, M.K. Reedy, "X-ray Diffraction Studies of Striated Muscles," Sliding Filament Mechanism in Muscle Contraction: Fifty Years of Research, Haruo Sugi, Springer, 2005, 45 - 60.

G. Stubbs, L. Parker, J. Junn, A. Kendall, "Flexible filamentous virus structures from fiber diffraction," Fibre Diffract. Rev. 13, 38-42 (2005).

F. Tannazi, G. Bunker, "Determination of Chemical Speciation by XAFS," Phys. Scripta. T115, 953-956 (2005). Cited 14 times

Patrick G. Telmer, Brian H. Shilton, "Structural Studies of an Engineered Zinc Biosensor Reveal an Unanticipated Mode of Zinc Binding," J. Mol. Biol. 354 (4), 829-840 (2005). Cited 13 times

Dominico Vigil, "Small-angle scattering studies of protein kinase A holoenzyme structure and activation," Ph.D., University of California, San Diego, 2005.

Q. Wang, A. Kretlow, M. Beekes, D. Naumann, L. Miller, "In Situ Characterization of Prion Protein Structure and Metal Accumulation in Scrapie-Infected Cells by Synchrotron Infrared and X-ray Imaging," Vib. Spectrosc. 38 (1-2), 61-69 (2005). DOI: 10.1016/j.vibspec.2005.02.023 Cited 33 times

T.-C. Weng, G.S. Waldo, J.E. Penner-Hahn, "A method for normalization of X-ray absorption spectra," J. Synchrotron Rad. 12 (4), 506-510 (2005). Cited 87 times

Ph. Wernet, D. Testemale, J.-L. Hazemann, R. Argoud, P. Glatzel, L.G.M. Pettersson, A. Nilsson, U. Bergmann, "Spectroscopic characterization of microscopic hydrogen-bonding disparities in supercritical water," J. Chem. Phys. 123 (15), 154503-1-154503-7 (2005). Cited 78 times

V.K. Yachandra, "The Catalytic Manganese Cluster: Organization of the Metal Ions," Photosystem II The Light-Driven Water: Plastoquinone Oxidoreductase, T.J. Wydrzynski, K. Satoh, eds., Springer Verlag, 2005, 235 - 260.

Junko Yano, Jan Kern, Klaus-Dieter Irrgang, Matthew J. Latimer, Uwe Bergmann, Pieter Glatzel, Yulia Pushkar, Jacek Biesiadka, Bernhard Loll, Kenneth Sauer, Johannes Messinger, Athina Zouni, Vittal K. Yachandra, "X-ray damage to the Mn[subscript 4]Ca complex in single crystals of photosystem II: A case study for metalloprotein crystallography," Proc. Natl. Acad. Sci. USA 102 (34), 12047-12052 (2005). Cited 540 times

Junko Yano, Yulia Pushkar, Pieter Glatzel, Azul Lewis, Kenneth Sauer, Johannes Messinger, Uwe Bergmann, Vittal Yachandra, "High-Resolution Mn EXAFS of the Oxygen-Evolving Complex in Photosystem II: Structural Implications for the Mn[subscript 4]Ca Cluster," J. Am. Chem. Soc. 127 (43), 14974-14975 (2005). Cited 172 times

Frank de Groot, "Multiplet effects in X-ray spectroscopy," Coordin. Chem. Rev. 249 (1-2), 31-63 (2005). DOI: 10.1016/j.ccr.2004.03.018 Cited 645 times

Frank M.F. de Groot, Pieter Glatzel, Uwe Bergmann, Peter A. van Aken, Raul A. Barrea, Stephan Klemme, Michael Havecker, Axel Knop-Gericke, Willem M. Heijboer, Bert M. Weckhuysen, "1s2p Resonant Inelastic X-ray Scattering of Iron Oxides," J. Phys. Chem. B 109 (44), 20751-20762 (2005). Cited 112 times

R.A. Barrea, D. Gore, E. Kondrashkina, T. Weng, R. Heurich, M. Vukonich, J. Orgel, M. Davidson, J.F. Collingwood, A. Mikhaylova, T.C. Irving, "The BioCAT Microprobe for X-Ray Fluorescence Imaging, MicroXAFS and Microdiffraction Studies on Biological Samples," Proceedings of the 8th International Conference on X-ray Microscopy IPAP Conf. Series 7, Institute of Pure and Applied Physics (2006), 230 - 232.

Wen Bian, Hong Wang, Ian McCullough, Gerald Stubbs, "WCEN: a computer program for initial processing of fiber diffraction patterns," J. Appl. Crystallogr. 39 (5), 752-756 (2006). DOI: 10.1107/S0021889806025386 Cited 28 times

Osman Bilsel, C. Robert Matthews, "Molecular dimensions and their distributions in early folding intermediates," Curr. Opin. Struct. Biol. 16 (1), 86-93 (2006). DOI: 10.1016/j.sbi.2006.01.007 Cited 41 times

Di Chen, Qiuzhi Cindy Cui, Huanjie Yang, Q. Ping Dou, "Disulfiram, a Clinically Used Anti-Alcoholism Drug and Copper-Binding Agent, Induces Apoptotic Cell Death in Breast Cancer Cultures and Xenografts via Inhibition of the Proteasome Activity," Cancer Res. 66 (21), 10425-10433 (2006). DOI: 10.1158/0008-5472.CAN-06-2126 Cited 572 times

Joanna Collingwood, Jon Dobson, "Mapping and characterization of iron compounds in Alzheimer’s tissue," J. Alzheimers Dis. 10 (2-3), 215-222 (2006). Cited 77 times

Sacha De Carlo, Baoyu Chen, Timothy R. Hoover, Elena Kondrashkina, Eva Nogales, B. Tracy Nixon, "The structural basis for regulated assembly and function of the transcriptional activator NtrC," Gene Dev. 20 (11), 1485-1495 (2006). DOI: 10.1101/gad.1418306 Cited 102 times

Charles Dumont, Yoshitaka Matsumura, Seung Joong Kim, Jinsong Li, Elena Kondrashkina, Hiroshi Kihara, Martin Gruebele, "Solvent-tuning the collapse and helix formation time scales of [lambda][superscript*][subscript 6-85]," Protein Sci. 15, 2596-2604 (2006). DOI: 10.1110/ps.062257406 Cited 29 times

Deniz Erdemir, "Understanding the early stages of crystallization by X -ray scattering and laser irradiation," Ph.D., Illinois Institute of Technology, 2006.

Gerrie P. Farman, John S. Walker, Pieter P. de Tombe, Thomas C. Irving, "Impact of osmotic compression on sarcomere structure and myofilament calcium sensitivity of isolated rat myocardium," Amer. J. Physiol. Heart. Circ. Physiol. 291, H1847-H1855 (2006). DOI: 10.1152/ajpheart.01237.2005 Cited 51 times

Dan Grilley, Ana Maria Soto, David E. Draper, "Mg[superscript 2+]–RNA interaction free energies and their relationship to the folding of RNA tertiary structures," Proc. Natl. Acad. Sci. USA 103 (38), 14003-14008 (2006). DOI: 10.1073/pnas.0606409103 Cited 101 times

Hugh Huxley, Massimo Reconditi, Alex Stewart, Tom Irving, "X-ray Interference Studies of Crossbridge Action in Muscle Contraction: Evidence from Muscles During Steady Shortening," J. Mol. Biol. 363 (4), 762-772 (2006). DOI: 10.1016/j.jmb.2006.08.055 Cited 38 times

Hugh Huxley, Massimo Reconditi, Alex Stewart, Tom Irving, "X-ray Interference Studies of Crossbridge Action in Muscle Contraction: Evidence from Quick Releases," J. Mol. Biol. 363 (4), 743-761 (2006). DOI: 10.1016/j.jmb.2006.08.075 Cited 60 times

Veronica J. James, "A place for fiber diffraction in the detection of breast cancer?," Cancer Detect. Prev. 30 (3), 233-238 (2006). DOI: 10.1016/j.cdp.2006.04.001 Cited 13 times

Veronica J. James, "Reply to the letter of Rogers et al. entitled 'Reproducibility of cancer diagnosis using hair'," Int. J. Cancer 118 (4), 1061-1062 (2006). DOI: 10.1002/ijc.21457 Cited 1 times

Srinivas Janaswamy, Rengaswami Chandrasekaran, "Sodium [iota]-Carrageenan: A Paradigm of Polymorphism and Pseudopolymorphism," Macromolecules 39 (9), 3345-3349 (2006). DOI: 10.1021/ma060024b Cited 12 times

Amy Kendall, Gerald Stubbs, "Oriented sols for fiber diffraction from limited quantities or hazardous materials," J. Appl. Crystallogr. 39 (1), 39-41 (2006). DOI: 10.1107/S0021889805033455 Cited 8 times

Rumiana Koynova, Li Wang, Robert C. MacDonald, "An intracellular lamellar–nonlamellar phase transition rationalizes the superior performance of some cationic lipid transfection agents," Proc. Natl. Acad. Sci. USA 103 (39), 14373-14378 (2006). DOI: 10.1073/pnas.0603085103 Cited 146 times

Julia Kraineva, "The Handbook of Xray Single-Bounce Monocapillary Optics, Including Optical Design and Synchrotron Applications," Ph.D., University of Dortmund , 2006.

Julia Kraineva, Chiara Nicolini, Pappannan Thiyagarajan, Elena Kondrashkina, Roland Winter, "Incorporation of [alpha]-chymotrypsin into the 3D channels of bicontinuous cubic lipid mesophases," BBA- Proteins Proteom. 1764 (3), 424-433 (2006). DOI: 10.1016/j.bbapap.2005.11.004 Cited 38 times

Deborah A. Kuzmanovic, Ilya Elashvili, Charles Wick, Catherine O’Connell, Susan Krueger, "Quantification of RNA in bacteriophage MS2-like viruses in solution by small-angle X-ray scattering," Radiat. Phys. Chem. 75 (3), 359-368 (2006). DOI: 10.1016/j.radphyschem.2005.11.005 Cited 5 times

Raphael C. Lee, Florin Despa, L. Guo, Pravin Betala, Anne Kuo, P. Thiyagarajan, "Surfactant Copolymers Prevent Aggregation of Heat Denatured Lysozyme," Ann. Biomed. Eng. 34 (7), 1190-1200 (2006). DOI: 10.1007/s10439-006-9139-z Cited 31 times

Joseph P.R.O. Orgel, Thomas C. Irving, Andrew Miller, Tim J. Wess, "Microfibrillar structure of type I collagen in situ," Proc. Natl. Acad. Sci. USA 103 (24), 9001-9005 (2006). DOI: 10.1073/pnas.0502718103 Cited 764 times

Rekha Pattanayek, Dewight R. Williams, Sabuj Pattanayek, Yao Xu, Tetsuya Mori, Carl H. Johnson, Phoebe L. Stewart, Martin Egli, "Analysis of KaiA-DaiC protein interactions in the cyano-bacterial circadian clock using hybrid structural methods," EMBO J. 25, 2017-2028 (2006). DOI: 10.1038/sj.emboj.7601086 Cited 81 times

Tatjana Paunesku, Stefan Vogt, Jorg Maser, Barry Lai, Gayle Woloschak, "X-Ray Fluorescence Microprobe Imaging in Biology and Medicine," J. Cell. Biochem. 99 (6), 1489-1502 (2006). DOI: 10.1002/jcb.21047 Cited 191 times

Massimo Reconditi, "Recent improvements in small angle x-ray diffraction for the study of muscle physiology," Rep. Prog. Phys. 69 (10), 2709-2759 (2006). DOI: 10.1088/0034-4885/69/10/R01 Cited 52 times

Alexander K. Showalter, Brandon J. Lamarche, Marina Bakhtina, Mei-I Su, Kuo-Hsiang Tang, Ming-Daw Tsai, "Mechanistic Comparison of High-Fidelity and Error-Prone DNA Polymerases and Ligases Involved in DNA Repair," Chem. Rev. 106 (2), 340-360 (2006). DOI: 10.1021/cr040487k Cited 59 times

John M. Squire, Tanya Bekyarova, Gerrie Farman, David Gore, Ganeshalingam Rajkumar, Carlo Knupp, Carmen Lucaveche, Mary C. Reedy, Michael K. Reedy, Thomas C. Irving, "The Myosin Filament Superlattice in the Flight Muscles of Flies: A-band Lattice Optimisation for Stretch-activation?," J. Mol. Biol. 361 (5), 823-838 (2006). DOI: 10.1016/j.jmb.2006.06.072 Cited 18 times

Anna-Karin E. Svensson, Osman Bilsel, Elena Kondrashkina, Jill A. Zitzewitz, C. Robert Matthews, "Mapping the Folding Free Energy Surface for Metal-free Human Cu,Zn Superoxide Dismutase," J. Mol. Biol. 364 (5), 1084-1102 (2006). DOI: 10.1016/j.jmb.2006.09.005 Cited 53 times

Boris G. Tenchov, Robert C. MacDonald, David P. Siegel, "Cubic Phases in Phosphatidylcholine-Cholesterol Mixtures: Cholesterol as Membrane 'Fusogen'," Biophys. J. 91 (7), 2508-2516 (2006). DOI: 10.1529/biophysj.106.083766 Cited 111 times

Boris Tenchov, Erin M. Vescio, G. Dennis Sprott, Mark L. Zeidel, John C. Mathai, "Salt Tolerance of Archaeal Extremely Halophilic Lipid Membranes," J. Biol. Chem. 281 (15), 10016-10023 (2006). DOI: 10.1074/jbc.M600369200 Cited 48 times

Li Wang, Rumiana Koynova, Harsh R. Parikh, Robert C. MacDonald, "Transfection Activity of Binary Mixtures of Cationic O-Substituted Phosphatidylcholine Derivatives: The Hydrophobic Core Strongly Modulates Physical Properties and DNA Delivery Efficacy," Biophys. J. 91 (10), 3692-3706 (2006). DOI: 10.1529/biophysj.106.092700 Cited 51 times

U. Bergmann, D. Nordlund, Ph. Wernet, M. Odelius, L.G.M. Pettersson, A. Nilsson, "Isotope effects in liquid water probed by x-ray Raman spectroscopy," Phys. Rev. B 76, 024202-1-024202-6 (2007). DOI: 10.1103/PhysRevB.76.024202 Cited 76 times

Baoyu Chen, Michaeleen Doucleff, David E. Wemmer, Sacha De Carlo, Hector H. Huang, Eva Nogales, Timothy R. Hoover, Elena Kondrashkina, Liang Guo, B. Tracy Nixon, "ATP Ground- and Transition-States of Bacterial Enhancer Binding AAA+ ATPases Support Complex Formation with Their Target Protein, [sigma]54," Structure 15 (4), 429-440 (2007). DOI: 10.1016/j.str.2007.02.007 Cited 62 times

Di Chen, Qiuzhi Cindy Cui, Huanjie Yang, Raul A. Barrea, Fazlul H. Sarkar, Shijie Sheng, Bing Yan, G. Prem Veer Reddy, Q. Ping Dou, "Clioquinol, a Therapeutic Agent for Alzheimer's Disease, Has Proteasome-Inhibitory, Androgen Receptor–Suppressing, Apoptosis-Inducing, and Antitumor Activities in Human Prostate Cancer Cells and Xenografts," Cancer Res. 67 (4), 1636-1644 (2007). DOI: 10.1158/0008-5472.CAN-06-3546 Cited 186 times

Brett A. Colson, Tanya Bekyarova, Daniel P. Fitzsimonsk, Thomas C. Irving, Richard L. Moss, "Radial Displacement of Myosin Cross-bridges in Mouse Myocardium due to Ablation of Myosin Binding Protein-C," J. Mol. Biol. 367 (1), 36-41 (2007). DOI: 10.1016/j.jmb.2006.12.063 Cited 69 times

Gregory Darnell, Joseph P.R.O. Orgel, Reinhard Pahl, Stephen C. Meredith, "Flanking Polyproline Sequences Inhibit [beta]-Sheet Structure in Polyglutamine Segments by Inducing PPII-like Helix Structure," J. Mol. Biol. 374 (3), 688-704 (2007). DOI: 10.1016/j.jmb.2007.09.023 Cited 129 times

Deniz Erdemir, Soma Chattopadhyay, Liang Guo, Jan Ilavsky, Heinz Amenitsch, Carlo U. Segre, Allan S. Myerson, "Relationship between Self-Association of Glycine Molecules in Supersaturated Solutions and Solid State Outcome," Phys. Rev. Lett. 99, 115702-1-115702-4 (2007). DOI: 10.1103/PhysRevLett.99.115702 Cited 57 times

Gerrie P. Farman, Edward J. Allen, David Gore, Thomas C. Irving, Pieter P. de Tombe, "Interfilament Spacing Is Preserved during Sarcomere Length Isometric Contractions in Rat Cardiac Trabeculae," Biophys. J. 92 (9), L73-L75 (2007). DOI: 10.1529/biophysj.107.104257 Cited 20 times

Henk Granzier, Michael Radke, Joseph Royal, Yiming Wu, Thomas C. Irving, Michael Gotthardt, Siegfried Labeit, "Functional genomics of chicken, mouse, and human titin supports splice diversity as an important mechanism for regulating biomechanics of striated muscle," Am. J. Physiol. - Reg. I. 293, R557-R567 (2007). DOI: 10.1152/ajpregu.00001.2007 Cited 26 times

Michal Hammel, Daniel Nemecek, J. Andrew Keightley, George J. Thomas, Jr., Brian V. Geisbrecht, "The Staphylococcus aureus extracellular adherence protein (Eap) adopts an elongated but structured conformation in solution," Protein Sci. 16 (12), 2605-2617 (2007). DOI: 10.1110/ps.073170807 Cited 31 times

H.E. Huxley, "Structural Behavior of Myosin Crossbridges during muscle contraction," Regulatory Mechanisms of striated Muscle Contration Series, Ebashi, Setsuro; Ohtsuki, Iwao, eds., Springer, 2007, 315 - 326.

Jaby Jacob, Robin S. Dothager, P. Thiyagarajan, Tobin R. Sosnick, "Fully Reduced Ribonuclease A Does not Expand at High Denaturant Concentration or Temperature," J. Mol. Biol. 367 (3), 609-615 (2007). DOI: 10.1016/j.jmb.2007.01.012 Cited 39 times

Amy Kendall, Wen Bian, Justin Junn, Ian McCullough, David Gore, Gerald Stubbs, "Radial density distribution and symmetry of a Potexvirus, narcissus mosaic virus," Virology 357 (2), 158-164 (2007). DOI: 10.1016/j.virol.2006.07.051 Cited 10 times

Amy Kendall, Michele McDonald, Gerald Stubbs, "Precise determination of the helical repeat of tobacco mosaic virus," Virology 369 (1), 226-227 (2007). DOI: 10.1016/j.virol.2007.08.013 Cited 24 times

MJ. Kidd, "Investigation of Biological Systems Using Synchrotron X-ray Light Sources," Ph.D., University of Michigan, 2007.

Rumiana Koynova, Robert C. MacDonald, "Natural lipid extracts and biomembrane-mimicking lipid compositions are disposed to form nonlamellar phases, and they release DNA from lipoplexes most efficiently," BBA-Biomembranes 1768 (10), 2373-2382 (2007). DOI: 10.1016/j.bbamem.2007.04.026 Cited 34 times

Rumina Koynova, Yury S. Tarahovsky, Li Wang, Robert C. MacDonald, "Lipoplex formulation of superior efficacy exhibits high surface activity and fusogenicity, and readily releases DNA," BBA-Biomembranes 1768 (2), 375-386 (2007). DOI: 10.1016/j.bbamem.2006.10.016 Cited 57 times

Rumiana Koynova, Li Wang, Robert C. MacDonald, "Synergy in Lipofection by Cationic Lipid Mixtures: Superior Activity at the Gel-Liquid Crystalline Phase Transition," J. Phys. Chem. B 111 (27), 7786-7795 (2007). DOI: 10.1021/jp071286y Cited 29 times

Vivek V. Nagarkar, Bipin Singh, Liang Guo, David Gore, Thomas C. Irving, "EMCCD-Based Detector for Time-Resolved X-Ray Diffraction and Scattering Studies of Biological Specimens," 2006 IEEE Nuclear Science Symposium Conference, N19-6, IEEE (2007), 740 - 743. DOI: 10.1109/NSSMIC.2006.355960

Vivek V. Nagarkar, Bipin Singh, Liang Guo, David Gore, Thomas C. Irving, "Cost-effective EMCCD-based detector for time-resolved biological SAXS applications," Nucl. Instrum. Methods A 576 (1), 38-42 (2007). DOI: 10.1016/j.nima.2007.01.116 Cited 8 times

Kanji Oshima, Yasunori Takezawa, Yasunobu Sugimot, Takakazu Kobayashi, Thomas C. Irving, Katsuzo Wakabayashi, "Axial Dispositions and Conformations of Myosin Crossbridges Along Thick Filaments in Relaxed and Contracting States of Vertebrate Striated Muscles by X-ray Fiber Diffraction," J. Mol. Biol. 367 (1), 275-301 (2007). DOI: 10.1016/j.jmb.2006.12.036 Cited 26 times

Hugh O’Neill, William T. Heller, Katherine E. Helton, Volker S. Urban, Elias Greenbaum, "Small-Angle X-ray Scattering Study of Photosystem I-Detergent Complexes: Implications for Membrane Protein Crystallization," J. Phys. Chem. B 111 (16), 4211-4219 (2007). DOI: 10.1021/jp067463x Cited 19 times

Gabriella Piazzesi, Massimo Reconditi, Marco Linari, Leonardo Lucii, Pasquale Bianco, Elisabetta Brunello, Valerie Decostre, Alex Stewart, David B. Gore, Thomas C. Irving, Malcolm Irving, Vincenzo Lombardi, "Skeletal Muscle Performance Determined by Modulation of Number of Myosin Motors Rather Than Motor Force or Stroke Size," Cell 131 (4), 784-795 (2007). DOI: 10.1016/j.cell.2007.09.045 Cited 246 times

Yulia Pushkar, Junko Yano, Pieter Glatzel, Johannes Messinger, Azul Lewis, Kenneth Sauer, Uwe Bergmann, Vittal Yachandra, "Structure and Orientation of the Mn[subscript 4]Ca Cluster in Plant Photosystem II Membranes Studied by Polarized Range-extended X-ray Absorption Spectroscopy," J. Biol. Chem. 282 (10), 7198-7208 (2007). DOI: 10.1074/jbc.M610505200 Cited 84 times

Yulia Pushkar, Junko Yano, Pieter Glatzel, Johannes Messinger, Azul Lewis, Kenneth Sauer, Uwe Bergmann, Vittal K. Yachandra, "Polarized Range-Extended X-Ray Absorption Spectroscopy of Oriented Photosystem II Membranes in the S[subscript 1] State," AIP Conference Proceedings, Britt Hedman, Piero Pianetta, eds., 882, Springer, (2007), 346 - 348. DOI: 10.1063/1.2644521

Diane J. Rodi, Suneeta Mandava, David B. Gore, Lee Makowski, Robert F. Fischetti, "Detection of Functional Ligand-Binding Events Using Synchrotron X-Ray Scattering," J. Biomol. Screen. 12 (7), 994-998 (2007). DOI: 10.1177/1087057107306104 Cited 15 times

Kasim Sader, Michael Reedy, David Popp, Carmen Lucaveche, John Trinick, "Measuring the resolution of uncompressed plastic sections cut using an oscillating knife ultramicrotome," J. Struct. Biol. 159 (1), 29-35 (2007). DOI: 10.1016/j.jsb.2007.01.019 Cited 6 times

Kittipong Tachampa, Helen Wang, Gerrie P. Farman, Pieter P. de Tombe, "Cardiac Troponin I Threonine 144: Role in Myofilament Length–Dependent Activation," Circ. Res. 101, 1081-1083 (2007). DOI: 10.1161/CIRCRESAHA.107.165258 Cited 45 times

Chun Tang, Charles D. Schwieters, G. Marius Clore, "Open-to-closed transition in apo maltose-binding protein observed by paramagnetic NMR," Nature 449, 1078-1082 (2007). DOI: 10.1038/nature06232 Cited 351 times

Kuo-Hsiang Tang, Hongjie Guo, Wen Yi, Ming-Daw Tsai, Peng George Wang, "Investigation of the Conformational States of Wzz and the Wzz·O-Antigen Complex under Near-Physiological Conditions," Biochemistry-US 46 (42), 11744-11752 (2007). DOI: 10.1021/bi701181r Cited 35 times

Xiaojing Tang, Stephen Orlicky, Zhenyuan Lin, Andrew Willems, Dante Neculai, Derek Ceccarelli, Frank Mercurio, Brian H. Shilton, Frank Sicheri, Mike Tyers, "Suprafacial Orientation of the SCF[superscript Cdc4] Dimer Accommodates Multiple Geometries for Substrate Ubiquitination," Cell 129 (6), 1165-1176 (2007). DOI: 10.1016/j.cell.2007.04.042 Cited 175 times

T. Twardowski, A. Fertala, J.P.R.O. Orgel, J.D. San Antonio, "Type I Collagen and Collagen Mimetics as Angiogenesis Promoting Superpolymers," Curr. Pharm. Design 13, 3608-3621 (2007). Cited 103 times

Junko Yano, Yulia Pushkar, Johannes Messinger, Uwe Bergmann, Pieter Glatzel, Vittal K. Yachandra, "Electronic Structure of the Mn[subscript 4]Ca Cluster in the Oxygen-Evolving Complex of Photosystem II Studied by Resonant Inelastic X-Ray Scattering," AIP Conference Proceedings, Britt Hedman, Piero Pianetta, eds., 882, Springer, (2007), 316 - 318. DOI: 10.1063/1.2644510

Junko Yano, Vittal K. Yachandra, "Oxidation state changes of the Mn[subscript 4]Ca cluster in Photosystem II," Photosyn. Res. 92 (3), 289-303 (2007). DOI: 10.1007/s11120-007-9153-5 Cited 34 times

Kaushik Balakrishnan, "Self-assembly of organic semiconducting molecules into one-dimensional nanostructures," Ph.D., Southern Illinois University at Carbondale, 2008.

T. Bekyarova, "Mechanism of stretch activation in insect flight muscle," Ph.D., Illinois Institute of Technology, 2008.

T.I. Bekyarova, M.C. Reedy, B.A.J. Baumann, R.T. Tregear, A. Ward, U. Krzic, K.M. Prince, R.J. Perz-Edwards, M. Reconditi, D. Gore, T.C. Irving, M.K. Reedy, "Reverse actin sliding triggers strong myosin binding that moves tropomyosin," Proc. Natl. Acad. Sci. USA 105 (30), 10372-10377 (2008). DOI: 10.1073/pnas.0709877105 Cited 17 times

Seema Chauhan, "Folding and dynamics of a bacterial group I ribozyme," Ph.D., Johns Hopkins University, 2008.

B. Chen, "Structural and functional studies of sigma54-dependent transcriptional activators," Ph.D., The Pennsylvania State University, 2008.

Baoyu Chen, Tatyana A. Sysoeva, Saikat Chowdhury, B. Tracy Nixon, "Regulation and action of the bacterial enhancer-binding protein AAA+ domains," Biochem. Soc. T. 36 (1), 89-93 (2008). DOI: 10.1042/BST0360089 Cited 12 times

Brett A. Colson, Tanya Bekyarova, Matthew R. Locher, Daniel P. Fitzsimons, Thomas C. Irving, Richard L. Moss, "Protein Kinase A–Mediated Phosphorylation of cMyBP-C Increases Proximity of Myosin Heads to Actin in Resting Myocardium," Circ. Res. 103, 244-251 (2008). DOI: 10.1161/CIRCRESAHA.108.178996 Cited 95 times

Gary L. Corino, Peter W. French, "Diagnosis of breast cancer by X-ray diffraction of hair," Int. J. Cancer 122 (4), 847-856 (2008). DOI: 10.1002/ijc.23085 Cited 19 times

M. Egli, R. Pattanayek, S. Pattanayek, "Protein-protein interactions in the cyanobacterial KaiABC circadian clock," INDAA-5 Conference, Jan C.A. Boeyens, J.F. Ogilvie, eds., Springer Publishers (2008), 283 - 299.

Srinivas Janaswamy, Rengaswami Chandrasekaran, "Heterogeneity in iota-carrageenan molecular structure: insights for polymorph II→III transition in the presence of calcium ions," Carbohyd. Res. 343 (2), 364-373 (2008). DOI: 10.1016/j.carres.2007.10.020 Cited 19 times

Amy Kendall, Michele McDonald, Wen Bian, Timothy Bowles, Sarah C. Baumgarten, Jian Shi, Phoebe L. Stewart, Esther Bullitt, David Gore, Thomas C. Irving, Wendy M. Havens, Said A. Ghabrial, Joseph S. Wall, Gerald Stubbs, "Structure of Flexible Filamentous Plant Viruses," J. Virol. 82 (19), 9546-9554 (2008). DOI: 10.1128/JVI.00895-08 Cited 80 times

Seung Joong Kim, "Studies of protein-protein and protein-water interactions by small angle x-ray scattering, terahertz spectroscopy, ASMOS, and computer simulation," Ph.D., UIUC, 2008.

Seung Joong Kim, Charles Dumont, Martin Gruebele, "Simulation-Based Fitting of Protein-Protein Interaction Potentials to SAXS Experiments," Biophys. J. 94, 4924-4931 (2008). DOI: 10.1529/biophysj.107.123240 Cited 28 times

Rumiana Koynova, Li Wang, Robert C. MacDonald, "Cationic Phospholipids Forming Cubic Phases: Lipoplex Structure and Transfection Efficiency," Mol. Pharmacol. 5 (5), 739-744 (2008). DOI: 10.1021/mp800011e Cited 28 times

Kristin A. Krukenberg, Friedrich Förster, Luke M. Rice, Andrej Sali, David A. Agard, "Multiple Conformations of E. coli Hsp90 in Solution: Insights into the Conformational Dynamics of Hsp90," Structure 16, 755-765 (2008). DOI: 10.1016/j.str.2008.01.021 Cited 141 times

Deborah A. Kuzmanovic, Ilya Elashvili, Catherine O’Connell, Susan Krueger, "A novel application of small-angle scattering techniques: Quality assurance testing of virus quantification technology," Radiat. Phys. Chem. 77 (3), 215-224 (2008). DOI: 10.1016/j.radphyschem.2007.10.004 Cited 8 times

Lee Makowski, Diane J. Rodi, Suneet Mandava, Satish Devarapalli, Robert F. Fischetti, "Characterization of Protein Fold by Wide-Angle X-ray Solution Scattering," J. Mol. Biol. 383 (3), 731-744 (2008). DOI: 10.1016/j.jmb.2008.08.038 Cited 35 times

Lee Makowski, Diane J. Rodi, Suneeta Mandava, David D.L. Minh, David B. Gore, Robert F. Fischetti, "Molecular Crowding Inhibits Intramolecular Breathing Motions in Proteins," J. Mol. Biol. 375 (2), 529-546 (2008). DOI: 10.1016/j.jmb.2007.07.075 Cited 83 times

M. McDonald, A. Kendall, M. Tanaka, J.S. Weissman, G. Stubbs, "Enclosed chambers for humidity control and sample containment in fiber diffraction," J. Appl. Crystallogr. 41 (1), 206-209 (2008). DOI: 10.1107/S0021889807060803 Cited 23 times

Mark S. Miller, Panagiotis Lekkas, Joan M. Braddock, Gerrie P. Farman, Bryan A. Ballif, Thomas C. Irving, David W. Maughan, Jim O. Vigoreaux, "Aging Enhances Indirect Flight Muscle Fiber Performance yet Decreases Flight Ability in Drosophila," Biophys. J. 95, 2391-2401 (2008). DOI: 10.1529/biophysj.108.130005 Cited 73 times

Shiamalee Perumal, Olga Antipova, Joseph P.R.O. Orgel, "Collagen fibril architecture, domain organization, and triple-helical conformation govern its proteolysis," Proc. Natl. Acad. Sci. USA 105 (8), 2824-2829 (2008). DOI: 10.1073/pnas.0710588105 Cited 282 times

Grzegorz Rebowski, Malgorzata Boczkowska, David B. Hayes, Liang Guo, Thomas C. Irving, Roberto Dominguez, "X-ray scattering study of actin polymerization nuclei assembled by tandem W domains," Proc. Natl. Acad. Sci. USA 105 (31), 10785-10790 (2008). DOI: 10.1073/pnas.0801650105 Cited 31 times

D.P. Siegel, B.G. Tenchov, "Influence of the Lamellar Phase Unbinding Energy on the Relative Stability of Lamellar and Inverted Cubic Phases," Biophys. J. 94, 3987-3995 (2008). DOI: 10.1529/biophysj.107.118034 Cited 35 times

Devin Strickland, Keith Moffat, Tobin R. Sosnick, "Light-activated DNA binding in a designed allosteric protein," Proc. Natl. Acad. Sci. USA 105 (31), 10709-10714 (2008). DOI: 10.1073/pnas.0709610105 Cited 243 times

Gerald Stubbs, Amy Kendall, Michele McDonald, Wen Bian, Timothy Bowles, Sarah Baumgarten, Ian McCullough, Jian Shi, Phoebe Stewart, Esther Bullitt, David Gore, Said Ghabrial, "Flexible filamentous virus structure from fiber diffraction," Powder Diffr. 23 (2), 113-117 (2008). DOI: 10.1154/1.2912331 Cited 2 times

Shawn M. Sweeney, Joseph P. Orgel, Andrzej Fertala, Jon D. McAuliffe, Kevin R. Turner, Gloria A. Di Lullo, Steven Chen, Olga Antipova, Shiamalee Perumal, Leena Ala-Kokko, Antonella Forlinoi, Wayne A. Cabral, Aileen M. Barnes, Joan C. Marini, James D. San Antonio, "Candidate Cell and Matrix Interaction Domains on the Collagen Fibril, the Predominant Protein of Vertebrates," J. Biol. Chem. 283 (30), 21187-21197 (2008). DOI: 10.1074/jbc.M709319200 Cited 235 times

Kuo-Hsiang Tang, Marc Niebuhr, Ann Aulabaugh, Ming-Daw Tsai, "Solution structures of 2 : 1 and 1 : 1 DNA polymerase–DNA complexes probed by ultracentrifugation and small-angle X-ray scattering," Nucleic Acids Res. 36 (3), 849-860 (2008). DOI: 10.1093/nar/gkm1101 Cited 17 times

Kuo-Hsiang Tang, Marc Niebuhr, Chang-Shung Tung, Hsiu-chien Chan, Chia-Cheng Chou, Ming-Daw Tsai, "Mismatched dNTP incorporation by DNA polymerase [beta] does not proceed via globally different conformational pathways," Nucleic Acids Res. 36 (9), 2948-2957 (2008). DOI: 10.1093/nar/gkn138 Cited 19 times

Boris G. Tenchov, Li Wang, Rumiana Koynova, Robert C. MacDonald, "Modulation of a membrane lipid lamellar–nonlamellar phase transition by cationic lipids: A measure for transfection efficiency," BBA-Biomembranes 1778 (10), 2405-2412 (2008). DOI: 10.1016/j.bbamem.2008.07.022 Cited 50 times

H. Tsuruta, T.C. Irving, "Experimental approaches for solution X-ray scattering and fiber diffraction," Curr. Opin. Struct. Biol. 18 (5), 601-608 (2008). DOI: 10.1016/j.sbi.2008.08.002 Cited 27 times

Shuying Wang, Michael T. Overgaard, YaoXiong Hu, David B. McKay, "The Bacillus subtilis RNA Helicase YxiN is Distended in Solution," Biophys. J. 94, L01-L03 (2008). DOI: 10.1529/biophysj.107.120709 Cited 20 times

Tim E. Williamson, Bruce A. Craig, Elena Kondrashkina, Chris Bailey-Kellogg, Alan M. Friedman, "Analysis of Self-Associating Proteins by Singular Value Decomposition of Solution Scattering Data," Biophys. J. 94, 4906-4923 (2008). DOI: 10.1529/biophysj.107.113167 Cited 29 times

Ying Wu, Elena Kondrashkina, Can Kayatekin, C. Robert Matthews, Osman Bilsel, "Microsecond acquisition of heterogeneous structure in the folding of a TIM barrel protein," Proc. Natl. Acad. Sci. USA 105 (36), 13367-13372 (2008). DOI: 10.1073/pnas.0802788105 Cited 57 times

Xiaobing Zuo, Jingbu Wang, Trenton R. Foster, Charles D. Schwieters, David M. Tiede, Samuel E. Butcher, Yun-Xing Wang, "Global Molecular Structure and Interfaces: Refining an RNA:RNA Complex Structure Using Solution X-ray Scattering Data," J. Am. Chem. Soc. 130 (11), 3292-3293 (2008). DOI: 10.1021/ja7114508 Cited 51 times

Raul A. Barrea, Di Chen, Thomas C. Irving, Q. Ping Dou, "Synchrotron X-ray imaging reveals a correlation of tumor copper speciation with Clioquinol's anticancer activity," J. Cell. Biochem. 108 (1), 96-105 (2009). DOI: 10.1002/jcb.22231 Cited 23 times

Raul A. Barrea, Rong Huang, Sterling Cornaby, Donald H. Bilderback, Thomas C. Irving, "High-flux hard X-ray microbeam using a single-bounce capillary with doubly focused undulator beam," J. Synchrotron Rad. 16 (1), 76-82 (2009). DOI: 10.1107/S0909049508039782 Cited 19 times

M. Jack Borrok, Yimin Zhu, Katrina T. Forest, Laura L. Kiessling, "Structure-Based Design of a Periplasmic Binding Protein Antagonist that Prevents Domain Closure," ACS Chem. Biol. 4 (6), 447-456 (2009). DOI: 10.1021/cb900021q Cited 27 times

Baoyu Chen, Tatyana A. Sysoeva, Saikat Chowdhury, Liang Guo, B.Tracy Nixon, "ADPase activity of recombinantly expressed thermotolerant ATPases may be caused by copurification of adenylate kinase of Escherichia coli," FEBS J. 276 (3), 807-815 (2009). DOI: 10.1111/j.1742-4658.2008.06825.x Cited 7 times

Gerrie P. Farman, Mark S. Miller, Mary C. Reedy, Felipe N. Soto-Adames, Jim O. Vigoreaux, David W. Maughan, Thomas C. Irving, "Phosphorylation and the N-terminal extension of the regulatory light chain help orient and align the myosin heads in Drosophila flight muscle," J. Struct. Biol. 168 (2), 240-249 (2009). DOI: 10.1016/j.jsb.2009.07.020 Cited 31 times

Alister D. Gould, Patrick G. Telmer, Brian H. Shilton, "Stimulation of the Maltose Transporter ATPase by Unliganded Maltose Binding Protein," Biochemistry-US 48 (33), 8051-8061 (2009). DOI: 10.1021/bi9007066 Cited 25 times

Simonida Grubjesic, Sonke Seifert, Millicent A. Firestone, "Cytoskeleton Mimetic Reinforcement of a Self-Assembled N,N′-Dialkylimidazolium Ionic Liquid Monomer by Copolymerization," Macromolecules 42 (15), 5461-5470 (2009). DOI: 10.1021/ma900905k Cited 25 times

Veronica J. James, "Fiber diffraction of skin and nails provides an accurate diagnosis of malignancies," Int. J. Cancer 125 (1), 133-138 (2009). DOI: 10.1002/ijc.24313 Cited 12 times

Seung Joong Kim, Yoshitaka Matsumura, Charles Dumont, Hiroshi Kihara, Martin Gruebele, "Slowing Down Downhill Folding: A Three-Probe Study," Biophys. J. 97 (1), 295-302 (2009). DOI: 10.1016/j.bpj.2009.04.041 Cited 19 times

Rumiana Koynova, Boris Tenchov, "Cationic phospholipids: structure–transfection activity relationships," Soft Matter 5 (17), 3187-3200 (2009). DOI: 10.1039/b902027f Cited 64 times

Rumiana Koynova, Boris Tenchov, Li Wang, Robert C. MacDonald, "Hydrophobic Moiety of Cationic Lipids Strongly Modulates Their Transfection Activity," Mol. Pharmacol. 6 (3), 951-958 (2009). DOI: 10.1021/mp8002573 Cited 81 times

Kristin A. Krukenberg, "Solution structures and conformational dynamics of the molecular chaperone Hsp90," Ph.D., University of California, San Francisco, 2009.

Nadia Kulshina, Nathan J. Baird, Adrian R. Ferré-D'Amaré, "Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch," Nat. Struct. Mol. Biol. 16, 1212-1217 (2009). DOI: 10.1038/nsmb.1701 Cited 169 times

Ramil F. Latypov, Dingjiang Liu, Jaby Jacob, Timothy S. Harvey, Pavel V. Bondarenko, Gerd R. Kleemann, David N. Brems, Andrei A. Raibekas, "Denaturant-Dependent Conformational Changes in a [beta]-Trefoil Protein: Global and Residue-Specific Aspects of an Equilibrium Denaturation Process," Biochemistry-US 48 (46), 10934-10947 (2009). DOI: 10.1021/bi901570k Cited 4 times

Andreana C. Leskovjan, "The involvement of metal ions in Alzheimer's disease pathology and implications for diagnosis and treatment," Ph.D., Stony Brook University, 2009.

Shahila Mehboob, Liang Guo, Wentao Fu, Anuradha Mittal, Tiffany Yau, Kent Truong, Mary Johlfs, Fei Long, Leslie W.-M. Fung, Michael E. Johnson, "Glutamate Racemase Dimerization Inhibits Dynamic Conformational Flexibility and Reduces Catalytic Rates," Biochemistry-US 48 (29), 7045-7055 (2009). DOI: 10.1021/bi9005072 Cited 16 times

Mark S. Miller, Corey M. Dambacher, Aileen F. Knowles, Joan M. Braddock, Gerrie P. Farman, Thomas C. Irving, Douglas M. Swank, Sanford I. Bernstein, David W. Maughan, "Alternative S2 Hinge Regions of the Myosin Rod Affect Myofibrillar Structure and Myosin Kinetics," Biophys. J. 96 (10), 4132-4143 (2009). DOI: 10.1016/j.bpj.2009.02.034 Cited 18 times

Sarvin Moghaddam, Gokhan Caliskan, Seema Chauhan, Changbong Hyeon, R.M. Briber, D. Thirumalai, Sarah A. Woodson, "Metal Ion Dependence of Cooperative Collapse Transitions in RNA," J. Mol. Biol. 393 (3), 753-764 (2009). DOI: 10.1016/j.jmb.2009.08.044 Cited 65 times

Joseph P.R.O. Orgel, Aya Eid, Olga Antipova, Jordi Bella, John E. Scott, "Decorin Core Protein (Decoron) Shape Complements Collagen Fibril Surface Structure and Mediates Its Binding," PLoS One 4 (9), e7028-1-e7028-10 (2009). DOI: 10.1371/journal.pone.0007028 Cited 114 times

Tatjana Paunesku, Stefan Vogt, Thomas C. Irving, Barry Lai, Raul A. Barrea, Jörg Maser, Gayle E. Woloschak, "Biological applications of X-ray microprobes," Int. J. Radiat. Biol. 85 (8), 710-713 (2009). DOI: 10.1080/09553000903009514 Cited 13 times

Massimo Reconditi, Tom C. Irving, "The Intensity Of The 2.7nm Reflection As A Constraint For Models Of Myosin Docking To Actin," Biophys. J. 96 (3), 616a (2009). DOI: 10.1016/j.bpj.2008.12.3256

K. Sadre-Bazzaz, "STRUCTURAL STUDIES OF THE PROTEASOME ACTIVATOR BLM10," Ph.D., University of Utah, 2009.

Stacey A.L. Tom-Yew, "Characterization of two new classes of periplasmic ferric binding proteins," Ph.D., University of British Colombia, 2009.

Robert Tycko, Kimberly L. Sciarretta, Joseph P.R.O. Orgel, Stephen C. Meredith, "Evidence for Novel [beta]-Sheet Structures in Iowa Mutant [beta]-Amyloid Fibrils," Biochemistry-US 48 (26), 6072-6084 (2009). DOI: 10.1021/bi9002666 Cited 118 times

Jennifer VanOudenhove, Eric Anderson, Susan Krueger, James L. Cole, "Analysis of PKR Structure by Small-Angle Scattering," J. Mol. Biol. 387 (4), 910-920 (2009). DOI: 10.1016/j.jmb.2009.02.019 Cited 40 times

Masahisa Wada, Laurent Heux, Yoshiharu Nishiyama, Paul Langan, "X-ray Crystallographic, Scanning Microprobe X-ray Diffraction, and Cross-Polarized/Magic Angle Spinning [superscript 13]C NMR Studies of the Structure of Cellulose III[subscript II]," Biomacromolecules 10 (2), 302-309 (2009). DOI: 10.1021/bm8010227 Cited 56 times

Jinbu Wang, Xiaobing Zuo, Ping Yu, Huan Xu, Mary R. Starich, David M. Tiede, Bruce A. Shapiro, Charles D. Schwieters, Yun-Xing Wang, "A Method for Helical RNA Global Structure Determination in Solution Using Small-Angle X-Ray Scattering and NMR Measurements," J. Mol. Biol. 393 (3), 717-734 (2009). DOI: 10.1016/j.jmb.2009.08.001 Cited 65 times

J.D. Ward, "Applications of synchrotron radiation to the structure, localization, and quantitation of zinc in biological systems," Ph.D., University of Michigan, 2009.

Holger Wille, Wen Bian, Michele McDonald, Amy Kendall, David W. Colby, Lillian Bloch, Julian Ollesch, Alexander L. Borovinskiy, Fred E. Cohen, Stanley B. Prusiner, Gerald Stubbs, "Natural and synthetic prion structure from X-ray fiber diffraction," Proc. Natl. Acad. Sci. USA 106 (40), 16990-16995 (2009). DOI: 10.1073/pnas.0909006106 Cited 165 times

Olga Antipova, Joseph P.R.O. Orgel, "In Situ D-periodic Molecular Structure of Type II Collagen," J. Biol. Chem. 285 (10), 7087-7096 (2010). DOI: 10.1074/jbc.M109.060400 Cited 55 times

Nathan J. Baird, Adrian R. Ferré-D'Amaré, "Idiosyncratically tuned switching behavior of riboswitch aptamer domains revealed by comparative small-angle X-ray scattering analysis," RNA 16, 598-609 (2010). DOI: 10.1261/rna.1852310 Cited 86 times

Nathan J. Baird, Haipeng Gong, Syed S. Zaheer, Karl F. Freed, Tao Pan, Tobin R. Sosnick, "Extended Structures in RNA Folding Intermediates Are Due to Nonnative Interactions Rather than Electrostatic Repulsion," J. Mol. Biol. 397 (5), 1298-1306 (2010). DOI: 10.1016/j.jmb.2010.02.025 Cited 17 times

Nathan J. Baird, Nadia Kulshina, Adrian R. Ferré D'Amaré, "Riboswitch function: Flipping the switch or tuning the dimmer?," RNA Biol. 7 (3), 328-332 (2010). DOI: 10.4161/rna.7.3.11932 Cited 57 times

R.A. Barrea, D. Gore, N. Kujala, C. Karanfil, S. Kozyrenko, R. Heurich, M. Vukonich, R. Huang, T. Paunesku, G. Woloschak, T.C. Irving, "Fast-scanning high-flux microprobe for biological X-ray fluorescence microscopy and microXAS," J. Synchrotron Rad. 17 (4), 522-529 (2010). DOI: 10.1107/S0909049510016869 Cited 17 times

Baoyu Chen, Tatyana A. Sysoeva, Saikat Chowdhury, Liang Guo, Sacha De Carlo, Jeffrey A. Hanson, Haw Yang, B. Tracy Nixon, "Engagement of Arginine Finger to ATP Triggers Large Conformational Changes in NtrC1 AAA+ ATPase for Remodeling Bacterial RNA Polymerase," Structure 18 (11), 1420-1430 (2010). DOI: 10.1016/j.str.2010.08.018 Cited 43 times

Brett A. Colson, Matthew R. Locher, Tanya Bekyarova, Jitandrakumar R. Patel, Daniel P. Fitzsimons, Thomas C. Irving, Richard L. Moss, "Differential roles of regulatory light chain and myosin binding protein-C phosphorylations in the modulation of cardiac force development," J. Physiol-London 588, 981-993 (2010). DOI: 10.1113/jphysiol.2009.183897 Cited 136 times

Kevin M. Dalton, Sean Crosson, "A Conserved Mode of Protein Recognition and Binding in a ParD−ParE Toxin−Antitoxin Complex," Biochemistry-US 49 (10), 2205-2215 (2010). DOI: 10.1021/bi902133s Cited 68 times

Alister D. Gould, Brian H. Shilton, "Studies of the Maltose Transport System Reveal a Mechanism for Coupling ATP Hydrolysis to Substrate Translocation without Direct Recognition of Substrate," J. Biol. Chem. 285, 11290-11296 (2010). DOI: 10.1074/jbc.M109.089078 Cited 22 times

Alexander Grishaev, Liang Guo, Thomas Irving, Ad Bax, "Improved Fitting of Solution X-ray Scattering Data to Macromolecular Structures and Structural Ensembles by Explicit Water Modeling," J. Am. Chem. Soc. 132 (44), 15484-15486 (2010). DOI: 10.1021/ja106173n Cited 104 times

Jin Huang, Shohei Koide, "Rational Conversion of Affinity Reagents into Label-Free Sensors for Peptide Motifs by Designed Allostery," ACS Chem. Biol. 5 (3), 273-277 (2010). DOI: 10.1021/cb900284c Cited 30 times

Rong Huang, Mati Meron, Naresh Kujala, Raul A. Barrea, "Phase-space analysis and experimental results for secondary focusing at X-ray beamlines," J. Synchrotron Rad. 17 (5), 644-652 (2010). DOI: 10.1107/S0909049510024337 Cited 4 times

Yuping Huang, Hailong Yu, Liang Guo, Qingrong Huang, "Structure and Self-Assembly Properties of a New Chitosan-Based Amphiphile," J. Phys. Chem. B 114 (23), 7719-7726 (2010). DOI: 10.1021/jp9122216 Cited 29 times

Veronica J. James, Nigel Kirby, "The Connection between the Presence of Melanoma and Changes in Fibre Diffraction Patterns," Cancers 2 (2), 1155-1165 (2010). DOI: 10.3390/cancers2021155

Duncan Kilburn, Joon Ho Roh, Liang Guo, Robert M. Briber, Sarah A. Woodson, "Molecular Crowding Stabilizes Folded RNA Structure by the Excluded Volume Effect," J. Am. Chem. Soc. 132 (25), 8690-8696 (2010). DOI: 10.1021/ja101500g Cited 165 times

Rumiana Koynova, "Analysis of Lipoplex Structure and Lipid Phase Changes," Liposomes Methods and Protocols, Volume 2: Biological Membrane Models, Volkmar Weissig, eds., Springer, 2010, 399 - 423. DOI: 10.1007/978-1-60761-447-0_28

Rumiana Koynova, Mariana Tihova, "Nanosized self-emulsifying lipid vesicles of diacylglycerol-PEG lipid conjugates: Biophysical characterization and inclusion of lipophilic dietary supplements," BBA-Biomembranes 1798 (3), 646-653 (2010). DOI: 10.1016/j.bbamem.2009.12.022 Cited 14 times

Jyotsana Lal, Peter Fouquet, Marco Maccarini, Lee Makowski, "Neutron Spin-Echo Studies of Hemoglobin and Myoglobin: Multiscale Internal Dynamics," J. Mol. Biol. 397 (2), 423-435 (2010). DOI: 10.1016/j.jmb.2010.01.029 Cited 21 times

Lee Makowski, "Characterization of proteins with wide-angle X-ray solution scattering (WAXS)," J. Struct. Funct. Geno. 11 (1), 9-19 (2010). DOI: 10.1007/s10969-009-9075-x

Michele McDonald, Amy Kendall, Wen Bian, Ian McCullough, Elizabeth Lio, Wendy M. Havens, Said A. Ghabrial, Gerald Stubbs, "Architecture of the potyviruses," Virology 405 (2), 309-313 (2010). DOI: 10.1016/j.virol.2010.06.013 Cited 9 times

Mark S. Miller, Bertrand C.W. Tanner, Lori R. Nyland, Jim O. Vigoreaux, "Comparative Biomechanics of Thick Filaments and Thin Filaments with Functional Consequences for Muscle Contraction," J. Biomed. Biotechnol. 2010, 473423-1-473423-14 (2010). DOI: 10.1155/2010/473423 Cited 11 times

Vivek V. Nagarkar, Valeriy Gaysinskiy, Olena E. Ovechkina, Stuart Miller, Bipin Singh, Liang Guo, Thomas Irving, "Bright Semiconductor Scintillator for High Resolution X-Ray Imaging," IEEE T. Nucl. Sci. 57 (3), 923-930 (2010). DOI: 10.1109/TNS.2010.2048125 Cited 8 times

Yoshiharu Nishiyama, Masahisa Wada, B. Leif Hanson, Paul Langan, "Time-resolved X-ray diffraction microprobe studies of the conversion of cellulose I to ethylenediamine-cellulose I," Cellulose 17 (4), 735-745 (2010). DOI: 10.1007/s10570-010-9415-9 Cited 29 times

Erin B. Purcell, Claudia A. McDonald, Bruce A. Palfey, Sean Crosson, "An Analysis of the Solution Structure and Signaling Mechanism of LovK, a Sensor Histidine Kinase Integrating Light and Redox Signals," Biochemistry-US 49 (31), 6761-6770 (2010). DOI: 10.1021/bi1006404 Cited 64 times

Min Ren, Qing Guo, Liang Guo, Martin Lenz, Feng Qian, Rory R. Koenen, Hua Xu, Alexander B. Schilling, Christian Weber, Richard D. Ye, Aaron R. Dinner, Wei-Jen Tang, "Polymerization of MIP-1 chemokine (CCL3 and CCL4) and clearance of MIP-1 by insulin-degrading enzyme," EMBO J. 29 (23), 3952-3966 (2010). DOI: 10.1038/emboj.2010.256 Cited 133 times

Joon Ho Roh, Liang Guo, J. Duncan Kilburn, Robert M. Briber, Thomas Irving, Sarah A. Woodson, "Multistage Collapse of a Bacterial Ribozyme Observed by Time-Resolved Small-Angle X-ray Scattering," J. Am. Chem. Soc. 132 (29), 10148-10154 (2010). DOI: 10.1021/ja103867p Cited 42 times

Nikolina Sekulic, Emily A. Bassett, Danielle J. Rogers, Ben E. Black, "The structure of (CENP-A–H4)[subscript 2] reveals physical features that mark centromeres," Nature 467, 347-351 (2010). DOI: 10.1038/nature09323 Cited 174 times

Jouko J. Virtanen, Lee Makowski, Tobin R. Sosnick, Karl F. Freed, "Modeling the Hydration Layer around Proteins: HyPred," Biophys. J. 99 (5), 1611-1619 (2010). DOI: 10.1016/j.bpj.2010.06.027 Cited 51 times

Yao Liang Wong, "Tail and Light Chain Mediated Regulation of the Kinesin-1 Motor," Ph.D., Northwestern University, 2010.

S.A. Woodson, "Compact intermediates in RNA folding," Annu. Rev. Biophys. 39, 61-77 (2010). DOI: 10.1146/annurev.biophys.093008.131334 Cited 144 times

Shenping Wu, Jun Liu, Mary C. Reedy, Richard T. Tregear, Hanspeter Winkler, Clara Franzini-Armstrong, Hiroyuki Sasaki, Carmen Lucaveche, Yale E. Goldman, Michael K. Reedy, Kenneth A. Taylor, "Electron Tomography of Cryofixed, Isometrically Contracting Insect Flight Muscle Reveals Novel Actin-Myosin Interactions," PLoS One 5 (9), e12643-1-e12643-21 (2010). DOI: 10.1371/journal.pone.0012643 Cited 44 times

Congqi Yan, Aysegul Altunbas, Tuna Yucel, Radhika P. Nagarkar, Joel P. Schneider, Darrin J. Pochan, "Injectable solid hydrogel: mechanism of shear-thinning and immediate recovery of injectable [beta]-hairpin peptide hydrogels," Soft Matter 6 (20), 5143-5156 (2010). DOI: 10.1039/C0SM00642D Cited 289 times

Sichun Yang, Lydia Blachowicz, Lee Makowski, Benoît Roux, "Multidomain assembled states of Hck tyrosine kinase in solution," Proc. Natl. Acad. Sci. USA 107 (36), 15757-15762 (2010). DOI: 10.1073/pnas.1004569107 Cited 175 times

Zhongzhou Zheng, Tobin R. Sosnick, "Protein Vivisection Reveals Elusive Intermediates in Folding," J. Mol. Biol. 397 (3), 777-788 (2010). DOI: 10.1016/j.jmb.2010.01.056 Cited 25 times

Xiaobing Zuo, Jinbu Wang, Ping Yu, Dan Eyler, Huan Xu, Mary R. Starich, David M. Tiede, Anne E. Simon, Wojciech Kasprzak, Charles D. Schwieters, Bruce A. Shapiro, Yun-Xing Wang, "Solution structure of the cap-independent translational enhancer and ribosome-binding element in the 3′ UTR of turnip crinkle virus," Proc. Natl. Acad. Sci. USA 107 (4), 1385-1390 (2010). DOI: 10.1073/pnas.0908140107 Cited 82 times

Pieter P. de Tombe, Ryan D. Mateja, Kittipong Tachampa, Younss Ait Mou, Gerrie P. Farman, Thomas C. Irving, "Myofilament length dependent activation," J. Mol. Cell. Cardiol. 48 (5), 851-858 (2010). DOI: 10.1016/j.yjmcc.2009.12.017 Cited 221 times

Clair Baldock, Andres F. Oberhauser, Liang Ma, Donna Lammie, Veronique Siegler, Suzanne M. Mithieux, Yidong Tu, John Yuen Ho Chow, Farhana Suleman, Marc Malfois, Sarah Rogers, Liang Guo, Thomas C. Irving, Tim J. Wess, Anthony S. Weiss, "Shape of tropoelastin, the highly extensible protein that controls human tissue elasticity," Proc. Natl. Acad. Sci. USA 108 (11), 4322-4327 (2011). DOI: 10.1073/pnas.1014280108 Cited 147 times

Louise Carø VohlanderRasmussen, Cristiano Luis Pinto Oliveira, Olwyn Byron, Janni Mosgaard Jensen, Jan Skov Pedersen, Hans Uffe Sperling-Petersen, Kim Kusk Mortensen, "Structure and dimerization of translation initiation factor aIF5B in solution," Biochem. Biophys. Res. Commun. 416 (1-2), 140-145 (2011). DOI: 10.1016/j.bbrc.2011.11.012 Cited 1 times

Zhe Chen, Liang Guo, Stephen R. Sprang, Paul C. Sternweis, "Modulation of a GEF switch: Autoinhibition of the intrinsic guanine nucleotide exchange activity of p115-RhoGEF," Protein Sci. 20 (1), 107-117 (2011). DOI: 10.1002/pro.542 Cited 26 times

Y. Cheng, "Structural and Functional Studies of E. coli Conjugative Relaxase-Helicase TraI and Arabidopsis thaliana Protein Arginine Methyltransferase 10 (PRMT10)," Ph.D., University of North Carolina at Chapel Hill, 2011.

Yuan Cheng, Dan E. McNamara, Michael J. Miley, Rebekah P. Nash, Matthew R. Redinbo, "Functional Characterization of the Multidomain F Plasmid TraI Relaxase-Helicase," J. Biol. Chem. 286 (14), 12670-12682 (2011). DOI: 10.1074/jbc.M110.207563 Cited 13 times

Adam L. Cloe, Joseph P.R.O. Orgel, Joseph R. Sachleben, Robert Tycko, Stephen C. Meredith, "The Japanese Mutant A[beta] ([delta]E22-A[beta subscript1-39]) Forms Fibrils Instantaneously, with Low-Thioflavin T Fluorescence: Seeding of Wild-Type A[beta subscript 1-40] into Atypical Fibrils by [delta]E22-A[beta subscript 1-39]," Biochemistry-US 50 (12), 2026-2039 (2011). DOI: 10.1021/bi1016217 Cited 84 times

Gerrie P. Farman, David Gore, Edward Allen, Kelly Schoenfelt, Thomas C. Irving, Pieter P. de Tombe, "Myosin head orientation: a structural determinant for the Frank-Starling relationship," Am. J. Physiol.-Heart C 300 (6), H2155-H2160 (2011). DOI: 10.1152/ajpheart.01221.2010 Cited 49 times

Thomas Irving, Yiming Wu, Tanya Bekyarova, Gerrie P. Farman, Norio Fukuda, Henk Granzier, "Thick-Filament Strain and Interfilament Spacing in Passive Muscle: Effect of Titin-Based Passive Tension," Biophys. J. 100 (6), 1499-1508 (2011). DOI: 10.1016/j.bpj.2011.01.059 Cited 68 times

Veronica Jean James, "Extremely Early Diagnostic Test for Prostate Cancer," J. Can. Ther. 2, 77-81 (2011). DOI: 10.4236/jct.2011.23051

Veronica James, "The Molecular Architecture for the Intermediate Filaments of Hard [alpha]-Keratin Based on the Superlattice Data Obtained from a Study ofMammals Using Synchrotron Fibre Diffraction," Biochem. Res. Int. 2011, 198325-1-198325-10 (2011). DOI: 10.1155/2011/198325 Cited 4 times

Sagar V. Kathuria, Liang Guo, Rita Graceffa, Raul Barrea, R. Paul Nobrega, C. Robert Matthews, Thomas C. Irving, Osman Bilsel, "Minireview: Structural insights into early folding events using continuous-flow time-resolved small-angle X-ray scattering," Biopolymers 95 (8), 550-558 (2011). DOI: 10.1002/bip.21628 Cited 43 times

N.G. Kujala, C. Karanfil, R.A. Barrea, "High resolution short focal distance Bent Crystal Laue Analyzer for copper K edge x-ray absorption spectroscopy," Rev. Sci. Instrum. 82 (6), 063106-1-063106-7 (2011). DOI: 10.1063/1.3595675 Cited 12 times

Eric C. Landahl, Olga Antipova, Angela Bongaarts, Raul Barrea, Robert Berry, Lester I. Binder, Thomas Irving, Joseph Orgel, Laurel Vana, Sarah E. Rice, "X-ray diffraction from intact tau aggregates in human brain tissue," Nucl. Instrum. Methods A 649 (1), 184-187 (2011). DOI: 10.1016/j.nima.2011.01.059 Cited 1 times

Andreana C. Leskovjan, Ariane Kretlow, Antonio Lanzirotti, Raul Barrea, Stefan Vogt, Lisa M. Miller, "Increased brain iron coincides with early plaque formation in a mouse model of Alzheimer's disease," Neuroimage 55 (1), 32-38 (2011). DOI: 10.1016/j.neuroimage.2010.11.073 Cited 115 times

Marcel Lucas, Greg L. Wagner, Yoshiharu Nishiyama, Leif Hanson, Indira P. Samayam, Constance A. Schall, Paul Langan, Kirk D. Rector, "Reversible swelling of the cell wall of poplar biomass by ionic liquid at room temperature," Bioresource Technol. 102 (6), 4518-4523 (2011). DOI: 10.1016/j.biortech.2010.12.087 Cited 48 times

L. Makowski, J. Bardhan, D. Gore, J. Lal, S. Mandava, S. Park, D.J. Rodi, N.T. Ho, C. Ho, R.F. Fischetti, "WAXS Studies of the Structural Diversity of Hemoglobin in Solution," J. Mol. Biol. 408 (5), 909-921 (2011). DOI: 10.1016/j.jmb.2011.02.062 Cited 24 times

Lee Makowski, David Gore, Suneeta Mandava, David Minh, Sanghyun Park, Diane J. Rodi, Robert F. Fischetti, "X-ray solution scattering studies of the structural diversity intrinsic to protein ensembles," Biopolymers 95 (8), 531-542 (2011). DOI: 10.1002/bip.21631 Cited 28 times

Anna L. Mallam, Inga Jarmoskaite, Pilar Tijerina, Mark Del Campo, Soenke Seifert, Liang Guo, Rick Russell, Alan M. Lambowitz, "Solution structures of DEAD-box RNA chaperones reveal conformational changes and nucleic acid tethering by a basic tail," Proc. Natl. Acad. Sci. USA 108 (30), 12254-12259 (2011). DOI: 10.1073/pnas.1109566108 Cited 65 times

R.S. Martin, "Structural and biochemical studies of the SMN oligomerization domain: A novel glycine zipper," Ph.D., University of Pennsylvania, 2011.

Marika Midon, Patrick Schäfer, Alfred Pingoud, Mahua Ghosh, Andrea F. Moon, Matthew J. Cuneo, Robert E. London, Gregor Meiss, "Mutational and biochemical analysis of the DNA-entry nuclease EndA from Streptococcus pneumoniae," Nucleic Acids Res. 39 (2), 623-634 (2011). DOI: 10.1093/nar/gkq802 Cited 25 times

Mark S. Miller, Gerrie P. Farman, Joan M. Braddock, Felipe N. Soto-Adames, Thomas C. Irving, Jim O. Vigoreaux, David W. Maughan, "Regulatory Light Chain Phosphorylation and N-Terminal Extension Increase Cross-Bridge Binding and Power Output in Drosophila at In Vivo Myofilament Lattice Spacing," Biophys. J. 100 (7), 1737-1746 (2011). DOI: 10.1016/j.bpj.2011.02.028 Cited 24 times

Priya Muthu, Li Wang, Chen-Ching Yuan, Katarzyna Kazmierczak, Wenrui Huang, Olga M. Hernandez, Masataka Kawai, Thomas C. Irving, Danuta Szczesna-Cordary, "Structural and functional aspects of the myosin essential light chain in cardiac muscle contraction," FASEB J. 25 (12), 4394-4405 (2011). DOI: 10.1096/fj.11-191973 Cited 43 times

J.P. Orgel, O. Antipova, I. Sagi, A. Bitler, D. Qiu, R. Wang, Y. Xu, J.D. San Antonio, "Collagen fibril surface displays a constellation of sites capable of promoting fibril assembly, stability, and hemostasis," Connect Tissue Res. 52 (1), 18-24 (2011). DOI: 10.3109/03008207.2010.511354 Cited 117 times

J.P.R. O. Orgel, J.D. San Antonio, O. Antipova, "Molecular and structural mapping of collagen fibril interactions," Connect Tissue Res. 52 (1), 2-17 (2011). DOI: 10.3109/03008207.2010.511353 Cited 61 times

B.M. Palmer, S. Sadayappan, Y. Wang, A.E. Weith, M.J. Previs, T. Bekyarova, T.C. Irving, J. Robbins, D.W. Maughan, "Roles for Cardiac MyBP-C in Maintaining Myofilament Lattice Rigidity and Prolonging Myosin Cross-Bridge Lifetime," Biophys. J. 101 (7), 1661-1669 (2011). DOI: 10.1016/j.bpj.2011.08.047 Cited 34 times

Robert J. Perz-Edwards, Thomas C. Irving, Bruce A.J. Baumann, David Gore, Daniel C. Hutchinson, Uroš Kržič, Rebecca L. Porter, Andrew B. Ward, Michael K. Reedy, "X-ray diffraction evidence for myosin-troponin connections and tropomyosin movement during stretch activation of insect flight muscle," Proc. Natl. Acad. Sci. USA 108 (1), 120-125 (2011). DOI: 10.1073/pnas.1014599107 Cited 75 times

E.B. Purcell, "A sensory kinase integrates light and redox signals to coordinate cellular response to external stress in Caulobacter crescentus," Ph.D., University of Chicago, 2011.

James D. San Antonio, Mary H. Schweitzer, Shane T. Jensen, Raghu Kalluri, Michael Buckley, Joseph P.R.O. Orgel, "Dinosaur Peptides Suggest Mechanisms of Protein Survival," PLoS One 6 (6), e20381-1-e20381-7 (2011). DOI: 10.1371/journal.pone.0020381 Cited 22 times

Bipin Singh, Samta Thacker, Valeriy Gaysinskiy, Lin Yang, Liang Guo, Thomas Irving, Vivek Nagarkar, "Modular high frame rate detector for synchrotron applications," Nucl. Instrum. Methods A 649 (1), 78-80 (2011). DOI: 10.1016/j.nima.2011.01.057 Cited 2 times

Tobin Sosnick, Sarah Woodson, "New era of molecular structure and dynamics from solution scattering experiments," Biopolymers 95 (8), 503-504 (2011). DOI: 10.1002/bip.21643 Cited 2 times

T.A. Sysoeva, "Asymmetry in the oligomeric NtrC1 AAA+ motor [electronic resource] : new implications for the mechanism," Ph.D., The Pennsylvania State University, 2011.

Bertrand C.W. Tanner, Mark S. Miller, Becky M. Miller, Panagiotis Lekkas, Thomas C. Irving, David W. Maughan, Jim O. Vigoreaux, "COOH-terminal truncation of flightin decreases myofilament lattice organization, cross-bridge binding, and power output in Drosophila indirect flight muscle," Am. J. Physiol.-Cell Ph. 301 (2), C383-C391 (2011). DOI: 10.1152/ajpcell.00016.2011 Cited 13 times

Laurel C. Vana, "Posttranslational Modifications of Tau in vitro and in Alzheimer’s Disease," Ph.D., Northwestern University, 2011.

Jouko Juhani Virtanen, Lee Makowski, Tobin R. Sosnick, Karl F. Freed, "Modeling the Hydration Layer around Proteins: Applications to Small- and Wide-Angle X-Ray Scattering," Biophys. J. 101 (8), 2061-2069 (2011). DOI: 10.1016/j.bpj.2011.09.021 Cited 58 times

Stephan E. Wolf, Jork Leiterer, Vitaliy Pipich, Raul Barrea, Franziska Emmerling, Wolfgang Tremel, "Strong Stabilization of Amorphous Calcium Carbonate Emulsion by Ovalbumin: Gaining Insight into the Mechanism of ‘Polymer-Induced Liquid Precursor’ Processes," J. Am. Chem. Soc. 133 (32), 12642-12649 (2011). DOI: 10.1021/ja202622g Cited 116 times

Stephan E. Wolf, Lars Müller, Raul Barrea, Christopher J. Kampf, Jork Leiterer, Ulrich Panne, Thorsten Hoffmann, Franziska Emmerling, Wolfgang Tremel, "Carbonate-coordinated metal complexes precede the formation of liquid amorphous mineral emulsions of divalent metal carbonates," Nanoscale 3 (3), 1158-1165 (2011). DOI: 10.1039/C0NR00761G Cited 99 times

Hailong Yu, Ji Li, Ke Shi, Qingrong Huang, "Structure of modified [epsilon]-polylysine micelles and their application in improving cellular antioxidant activity of curcuminoids," Food Function 2, 373-380 (2011). DOI: 10.1039/C1FO10053J Cited 52 times

Olga Antipova, Joseph P.R.O. Orgel, "Non-Enzymatic Decomposition of Collagen Fibers by a Biglycan Antibody and a Plausible Mechanism for Rheumatoid Arthritis," PLoS One 7 (3), e32241-1-e32241-8 (2012). DOI: 10.1371/journal.pone.0032241 Cited 22 times

Reza Behrouzi, Joon Ho Roh, Duncan Kilburn, R.M. Briber, Sarah A. Woodson, "Cooperative Tertiary Interaction Network Guides RNA Folding," Cell 149 (2), 348-357 (2012). DOI: 10.1016/j.cell.2012.01.057 Cited 80 times

Luiz E. Bertassoni, Joseph P.R. Orgel, Olga Antipova, Michael V. Swain, "The dentin organic matrix – limitations of restorative dentistry hidden on the nanometer scale," Acta Biomater. 8 (7), 2419-2433 (2012). DOI: 10.1016/j.actbio.2012.02.022 Cited 147 times

M.W. Bourassa, "The involvement of metal ions in copper-zinc superoxide dismutase related amyotrophic lateral sclerosis," Ph.D., Stony Brook University, 2012.

Jordan E. Burke, Dipali G. Sashital, Xiaobing Zuo, Yun-Xing Wang, Samuel E. Butcher, "Structure of the yeast U2/U6 snRNA complex," RNA 18, 673-683 (2012). DOI: 10.1261/rna.031138.111 Cited 73 times

Zhe Chen, Liang Guo, Jana Hadas, Stephen Gutowski, Stephen R. Sprang, Paul C. Sternweis, "Activation of p115-RhoGEF Requires Direct Association of G[alpha subscript 13] and the Dbl Homology Domain," J. Biol. Chem. 287 (30), 25490-25500 (2012). DOI: 10.1074/jbc.M111.333716 Cited 33 times

S. Chowdhury, "Ring asymmetry in the bacterial enhancer binding proteins guides interaction with Sigma-54 form of RNA polymerase," Ph.D., The Pennsylvania State University, 2012.

Brett A. Colson, Jitandrakumar R. Patel, Peter P. Chen, Tanya Bekyarova, Mohamed I. Abdalla, Carl W. Tong, Daniel P. Fitzsimons, Thomas C. Irving, Richard L. Moss, "Myosin binding protein-C phosphorylation is the principal mediator of protein kinase A effects on thick filament structure in myocardium," J. Mol. Cell. Cardiol. 53 (5), 609-616 (2012). DOI: 10.1016/j.yjmcc.2012.07.012 Cited 54 times

Michael D. Daily, Lee Makowski, George N. Phillips, Jr., Qiang Cui, "Large-scale motions in the adenylate kinase solution ensemble: Coarse-grained simulations and comparison with solution X-ray scattering," Chem. Phys. 396, 84-91 (2012). DOI: 10.1016/j.chemphys.2011.08.015 Cited 25 times

N.T. George, "Temperature gradients drive functional heterogeneity within muscle," Ph.D., University of Washington, 2012.

Huiying Gu, Gregory Robison, Lan Hong, Raul Barrea, Xing Wei, Martin R. Farlow, Yulia N. Pushkar, Yansheng Du, Wei Zheng, "Increased [beta]-amyloid deposition in Tg-SWDI transgenic mouse brain following in vivo lead exposure," Toxicol. Lett. 213 (2), 211-219 (2012). DOI: 10.1016/j.toxlet.2012.07.002 Cited 49 times

Kushol Gupta, Joseph E. Curtis, Susan Krueger, Young Hwang, Peter Cherepanov, Frederic D. Bushman, Gregory D. Van Duyne, "Solution Conformations of Prototype Foamy Virus Integrase and Its Stable Synaptic Complex with U5 Viral DNA," Structure 11 (20), 1918-1928 (2012). DOI: 10.1016/j.str.2012.08.023 Cited 27 times

Julien Herrou, Grant Rotskoff, Yun Luo, Benoît Roux, Sean Crosson, "Structural basis of a protein partner switch that regulates the general stress response of [alpha]-proteobacteria," Proc. Natl. Acad. Sci. USA 109 (21), E1415-E1423 (2012). DOI: 10.1073/pnas.1116887109 Cited 39 times

Pilong Li, Sudeep Banjade, Hui-Chun Cheng, Soyeon Kim, Baoyu Chen, Liang Guo, Marc Llaguno, Javoris V. Hollingsworth, David S. King, Salman F. Banani, Paul S. Russo, Qiu-Xing Jiang, B. Tracy Nixon, Michael K. Rosen, "Phase transitions in the assembly of multivalent signalling proteins," Nature 483, 336-340 (2012). DOI: 10.1038/nature10879 Cited 1735 times

Yunqi Li, Ji Li, Qiuyang Xia, Boce Zhang, Qin Wang, Qingrong Huan, "Understanding the Dissolution of [alpha]-Zein in Aqueous Ethanol and Acetic Acid Solutions," J. Phys. Chem. B 116 (39), 12057-12064 (2012). DOI: 10.1021/jp305709y Cited 107 times

L. Makowski, J. Bardhan, D. Gore, D.J. Rodi, R.F. Fischetti, "Multi-Wavelength Anomalous Diffraction Using Medium-Angle X-Ray Solution Scattering (MADMAX)," Biophys. J. 102 (4), 927-933 (2012). DOI: 10.1016/j.bpj.2012.01.026 Cited 8 times

Renee Martin, Kushol Gupta, Nisha S. Ninan, Kay Perry, Gregory D. Van Duyne, "The Survival Motor Neuron Protein Forms Soluble Glycine Zipper Oligomers," Structure 20 (11), 1929-1939 (2012). DOI: 10.1016/j.str.2012.08.024 Cited 58 times

Michele McDonald, Hayden Box, Wen Bian, Amy Kendall, Robert Tycko, Gerald Stubbs, "Fiber Diffraction Data Indicate a Hollow Core for the Alzheimer's A[beta] 3-Fold Symmetric Fibril," J. Mol. Biol. 423 (3), 454-461 (2012). DOI: 10.1016/j.jmb.2012.08.004 Cited 36 times

Kanji Oshima, Yasunobu Sugimoto, Thomas C. Irving, Katsuzo Wakabayashi, "Head-Head Interactions of Resting Myosin Crossbridges in Intact Frog Skeletal Muscles, Revealed by Synchrotron X-Ray Fiber Diffraction," PLoS One 7 (12), e52421-1-e52421-18 (2012). DOI: 10.1371/journal.pone.0052421 Cited 9 times

Coen A.C. Ottenheijm, Nicol C. Voermans, Bryan D. Hudson, Thomas Irving, Ger J.M. Stienen, Baziel G. van Engelen, Henk Granzier, "Titin-based stiffening of muscle fibers in Ehlers-Danlos Syndrome," J. Appl. Phys. 112 (7), 1157-1165 (2012). DOI: 10.1152/japplphysiol.01166.2011 Cited 30 times

Danaya Pakotiprapha, Martin Samuels, Koning Shen, Johnny H. Hu, David Jeruzalmi, "Structure and mechanism of the UvrA–UvrB DNA damage sensor," Nat. Struct. Mol. Biol. 19 (3), 291-298 (2012). DOI: 10.1038/nsmb.2240 Cited 66 times

R.I. Prashanti, "Biochemical characterization of the proteins involved in Gluconacetobacter hansenii cellulose synthesis," Ph.D., Pennsylvania State University, 2012.

Gregory Robison, Taisiya Zakharova, Sherleen Fu, Wendy Jiang, Rachael Fulper, Raul Barrea, Matthew A. Marcus, Wei Zheng, Yulia Pushkar, "X-Ray Fluorescence Imaging: A New Tool for Studying Manganese Neurotoxicity," PLoS One 7 (11), e48899-1-e48899-12 (2012). DOI: 10.1371/journal.pone.0048899 Cited 37 times

K.L. Sarachan, K.G. Valentine, K. Gupta, V.R. Moorman, J.M. Gledhill Jr, M. Bernens, C. Tommos, A.J. Wand, G.D. Van Duyne, "Solution structure of the core SMN–Gemin2 complex," Biochem. J. 445 (3), 361-370 (2012). DOI: 10.1042/BJ20120241 Cited 19 times

Evan Small, "Structure-Function Studies of the Cul3/Rbx1:Keap1 E3 Ubiquitin Ligase Complex," Ph.D., University of Illinois Chicago, 2012.

Gerald Stubbs, Amy Kendall, "Helical Viruses," Adv. Exp. Med. Biol. 726 (4), 631-658 (2012). DOI: 10.1007/978-1-4614-0980-9_28 Cited 35 times

Bertrand C.W. Tanner, Gerrie P. Farman, Thomas C. Irving, David W. Maughan, Bradley M. Palmer, Mark S. Miller, "Thick-to-Thin Filament Surface Distance Modulates Cross-Bridge Kinetics in Drosophila Flight Muscle," Biophys. J. 103 (6), 1275-1284 (2012). DOI: 10.1016/j.bpj.2012.08.014 Cited 18 times

William Wan, Holger Wille, Jan Stöhr, Ulrich Baxa, Stanley B. Prusiner, Gerald Stubbs, "Degradation of Fungal Prion HET-s(218-289) Induces Formation of a Generic Amyloid Fold," Biophys. J. 102 (10), 2339-2344 (2012). DOI: 10.1016/j.bpj.2012.04.011 Cited 24 times

C.D. Williams, "A new view of the radial geometry in muscle: myofilament lattice spacing controls force production and energy storage," Ph.D., University of Washington, 2012.

Stephen E. Wolf, Ingo Lieberwirth, Filipe Natalio, Jean-Francois Bardeau, Nicolas Delorme, Franziska Emmerling, Raul Barrea, Michael Kappl, Frederic Marin, "Merging models of biomineralisation with concepts of nonclassical crystallisation: is a liquid amorphous precursor involved in the formation of the prismatic layer of the Mediterranean Fan Mussel Pinna nobilis?," Faraday Discuss. 159, 433-448 (2012). DOI: 10.1039/C2FD20045G Cited 47 times

Hailong Yi, "Absorption and oral bioavailability of nanoencapsulated curcumin," Ph.D., Rutgers University, 2012.

Tae Yeon Yoo, Steve P. Meisburger, James Hinshaw, Lois Pollack, Gilad Haran, Tobin R. Sosnick, Kevin Plaxco, "Small-Angle X-ray Scattering and Single-Molecule FRET Spectroscopy Produce Highly Divergent Views of the Low-Denaturant Unfolded State," J. Mol. Biol. 418 (3-4), 226-236 (2012). DOI: 10.1016/j.jmb.2012.01.016 Cited 86 times

John Badger, Jyotsana Lal, Ross Harder, Hideyo Inouye, S. Charlotte Gleber, Stefan Vogt, Ian Robinson, Lee Makowski, "Three-dimensional Imaging of Crystalline Inclusions Embedded in Intact Maize Stalks," Sci. Rep. 3, 2843-1-2843-5 (2013). DOI: 10.1038/srep02843 Cited 3 times

Megan W. Bourassa, Andreana C. Leskovjan, Ryan V. Tappero, Erik R. Farquhar, Carol A. Colton, William E. Van Nostrand, Lisa M. Miller, "Elevated copper in the amyloid plaques and iron in the cortex are observed in mouse models of Alzheimer’s disease that exhibit neurodegeneration," Biomed. Spectrosc. Imaging 2 (2), 129-139 (2013). DOI: 10.3233/BSI-130041 Cited 48 times

F.M. Davis, "Nonlinear Viscoelastic Behavior of Ligaments and Tendons: Models and Experiments," Ph.D., Virginia Polytechnic Institute and State University, 2013.

A.S. DeToma, "Insights on Metal Ions and Misfolded Proteins in Alzheimer's Disease Using Flavonoid Derivatives and X-ray Fluorescence Microscopy," Ph.D., University of Michigan, 2013.

R. Feest, "Engineering troponin C with altered Ca2+ binding properties to study mechanisms of enhanced contraction of cardiac muscle from healthy and infarcted hearts," Ph.D., University of Washington, 2013.

N.T. George, T.C. Irving, C.D. Williams, T.L. Daniel, "The Cross-Bridge Spring: Can Cool Muscles Store Elastic Energy?," Science 340, 1217-1220 (2013). DOI: 10.1126/science.1229573 Cited 27 times

S.J. Goodson, "An investigation into effects of in vitro glycation on type I collagen fibrillar structure and related biochemistry," Ph.D., University of Cardiff, 2013.

Rita Graceffa, R. Paul Nobrega, Raul A. Barrea, Sagar V. Kathuria, Srinivas Chakravarthy, Osman Bilsel, Thomas C. Irving, "Sub-millisecond time-resolved SAXS using a continuous-flow mixer and X-ray microbeam," J. Synchrotron Rad. 20 (6), 820-825 (2013). DOI: 10.1107/S0909049513021833 Cited 55 times

Veronica J. James, "A Review of Low Angle Fibre Diffraction in the Diagnosis of Disease," Brit. J. Med. Med. Res. 3 (2), 383-397 (2013). DOI: 10.9734/BJMMR/2013/2432

Cahit Karanfil, Karyn Bischoff, Grant Bunker, "Hg and Se Speciation in Liver Tissue of Marine Birds," J. Phys. Conf. Series 430 (1), 012039-1-012039-4 (2013). DOI: 10.1088/1742-6596/430/1/012039 Cited 1 times

Sagar V. Kathuria, Alexander Chan, Rita Graceffa, R. Paul Nobrega, C. Robert Matthews, Thomas C. Irving, Blair Perot, Osman Bilsel, "Advances in turbulent mixing techniques to study microsecond protein folding reactions," Biopolymers 99 (11), 888-896 (2013). DOI: 10.1002/bip.22355 Cited 21 times

Amy Kendall, Dewight Williams, Wen Bian, Phoebe L. Stewart, Gerald Stubbs, "Barley stripe mosaic virus: Structure and relationship to the tobamoviruses," Virology 443 (2), 265-270 (2013). DOI: 10.1016/j.virol.2013.05.010 Cited 8 times

Duncan Kilburn, Joon Ho Roh, Reza Behrouzi, Robert M. Briber, Sarah A. Woodson, "Crowders Perturb the Entropy of RNA Energy Landscapes to Favor Folding," J. Am. Chem. Soc. 135 (27), 10055-10063 (2013). DOI: 10.1021/ja4030098 Cited 48 times

Julian L. Klosowiak, Pamela J. Focia, Srinivas Chakravarthy, Eric C. Landahl, Douglas M. Freymann, Sarah E. Rice, "Structural coupling of the EF hand and C-terminal GTPase domains in the mitochondrial protein Miro," EMBO Rep. 14 (11), 968-974 (2013). DOI: 10.1038/embor.2013.151 Cited 60 times

David Lambright, Andrew W Malaby, Sagar V. Kathuria, R. Paul Nobrega, Osman Bilsel, C. Robert Matthews, Uma Muthurajan, Karolin Luger, Rajiv Chopra, Thomas C. Irving, Srinivas Chakravarthy, "Complementary techniques enhance the quality and scope of information obtained from SAXS," 2013 American Crystallographic Assoication Annual Meeting, ACA (2013), online.

Eric C. Landahl, Sarah E. Rice, "Model-independent decomposition of two-state data," Phys. Rev. E 88 (6), 062713-1-062713-7 (2013). DOI: 10.1103/PhysRevE.88.062713 Cited 2 times

Saskia Lassche, Ger J.M. Stienen, Tom C. Irving, Silvère M. van der Maarel, Nicol C. Voermans, George W. Padberg, Henk Granzier, Baziel G.M. van Engelen, Coen A.C. Ottenheijm, "Sarcomeric dysfunction contributes to muscle weakness in facioscapulohumeral muscular dystrophy," Neurology 80 (8), 733-737 (2013). DOI: 10.1212/WNL.0b013e318282513b Cited 27 times

Eun-Jeong Lee, Joshua Nedrud, Peter Schemmel, Michael Gotthardt, Thomas C. Irving, Henk L. Granzier, "Calcium sensitivity and myofilament lattice structure in titin N2B KO mice," Arch. Biochem. Biophys. 535 (1), 76-83 (2013). DOI: 10.1016/j.abb.2012.12.004 Cited 17 times

Ji Li, "Towards biopolymer platforms via small molecule crosslinking, organocatalytic ring-opening polymerization, and electrospinning," Ph.D., Rutgers University, 2013.

Yoshitaka Matsumura, Masaji Shinjo, Seung Joong Kim, Nobuyuki Okishio, Martin Gruebele, Hiroshi Kihara, "Transient Helical Structure during PI3K and Fyn SH3 Domain Folding," J. Phys. Chem. B 117 (17), 4836-4843 (2013). DOI: 10.1021/jp400167s Cited 14 times

Lauren A. McCord, Wenguang G. Liang, Evan Dowdell, Vasilios Kalas, Robert J. Hoey, Akiko Koide, Shohei Koide, Wei-Jen Tang, "Conformational states and recognition of amyloidogenic peptides of human insulin-degrading enzyme," Proc. Natl. Acad. Sci. USA 110 (34), 13827-13832 (2013). DOI: 10.1073/pnas.1304575110 Cited 52 times

David D.L. Minh, Lee Makowski, "Wide-Angle X-Ray Solution Scattering for Protein-Ligand Binding: Multivariate Curve Resolution with Bayesian Confidence Intervals," Biophys. J. 104 (4), 873-883 (2013). DOI: 10.1016/j.bpj.2012.12.019 Cited 20 times

Kristof Nolan, Chandramohan Kattamuri, David M. Luedeke, Xiaodi Deng, Amrita Jagpal, Fuming Zhang, Robert J. Linhardt, Alan P. Kenny, Aaron M. Zorn, Thomas B. Thompson, "Structure of Protein Related to Dan and Cerberus: Insights into the Mechanism of Bone Morphogenetic Protein Antagonism," Structure 21 (8), 1417-1429 (2013). DOI: 10.1016/j.str.2013.06.005 Cited 51 times

Joseph P.R.O Orgel, Thomas C. Irving, "Advances in Fiber Diffraction of Macromolecular Assembles," Encyclopedia of Analytical Chemistry, Robert A. Meyers, eds., Wiley, 2013, online. DOI: 10.1002/9780470027318.a9420

Danaya Pakotiprapha, David Jeruzalmi, "Small-angle X-ray scattering reveals architecture and A[subscript 2]B[subscript 2] stoichiometry of the UvrA–UvrB DNA damage sensor," Proteins 81 (1), 132-139 (2013). DOI: 10.1002/prot.24170 Cited 11 times

Sudeshna Paul, Alan M. Friedman, Chris Bailey-Kellogg, Bruce A. Craig, "Bayesian reconstruction of P(r) directly from two-dimensional detector images via a Markov chain Monte Carlo method," J. Appl. Crystallogr. 46 (2), 404-414 (2013). DOI: 10.1107/S002188981300109X Cited 3 times

Yulia Pushkar, Gregory Robison, Brendan Sullivan, Sherleen X. Fu, Meghan Kohne, Wendy Jiang, Sven Rohr, Barry Lai, Matthew A. Marcus, Taisiya Zakharova, Wei Zheng, "Aging results in copper accumulations in glial fibrillary acidic protein-positive cells in the subventricular zone," Aging Cell 12 (5), 823-832 (2013). DOI: 10.1111/acel.12112 Cited 63 times

Vijay S. Rao, F. Steven Korte, Maria V. Razumova, Erik R. Feest, Hsiaoman Hsu, Thomas C. Irving, Michael Regnier, Donald A. Martyn, "N-terminal phosphorylation of cardiac troponin-I reduces length-dependent calcium sensitivity of contraction in cardiac muscle," J. Physiol-London 591, 475-490 (2013). DOI: 10.1113/jphysiol.2012.241604 Cited 20 times

Krishnakumar M. Ravikumar, Wei Huang, Sichun Yang, "Fast-SAXS-pro: A unified approach to computing SAXS profiles of DNA, RNA, protein, and their complexes," J. Chem. Phys. 138 (2), 024112-1-024112-7 (2013). DOI: 10.1063/1.4774148 Cited 43 times

Gregory Robison, Taisiya Zakharova, Sherleen Fu, Wendy Jiang, Rachael Fulper, Raul Barrea, Wei Zheng, Yulia Pushkar, "X-ray fluorescence imaging of the hippocampal formation after manganese exposure," Metallomics 5 (11), 1554-1565 (2013). DOI: 10.1039/C3MT00133D Cited 30 times

Karen Rutherford, Peng Yuan, Kay Perry, Robert Sharp, Gregory D. Van Duyne, "Attachment site recognition and regulation of directionality by the serine integrases," Nucleic Acids Res. 41 (17), 8341-8356 (2013). DOI: 10.1093/nar/gkt580 Cited 57 times

O'Neil Shand, Karl Volz, "The solution structure of apo-iron regulatory protein 1," Gene 524 (2), 341-346 (2013). DOI: 10.1016/j.gene.2013.03.112 Cited 5 times

Bipin Singh, Stuart R. Miller, Harish B. Bhandari, Rita Graceffa, Thomas C. Irving, Vivek V. Nagarkar, "High-speed detector for time-resolved diffraction studies," J. Phys. Conf. Series 425 (9), 092005-1-092005-5 (2013). DOI: 10.1088/1742-6596/425/9/092005 Cited 3 times

Tatyana A. Sysoeva, Saikat Chowdhury, Liang Guo, B. Tracy Nixon, "Nucleotide-induced asymmetry within ATPase activator ring drives [sigma]54–RNAP interaction and ATP hydrolysis," Gene Dev. 27, 2500-2511 (2013). DOI: 10.1101/gad.229385.113 Cited 33 times

Boris G. Tenchov, Robert C. MacDonald, Barry R. Lentz, "Fusion Peptides Promote Formation of Bilayer Cubic Phases in Lipid Dispersions. An X-Ray Diffraction Study," Biophys. J. 104 (5), 1029-1037 (2013). DOI: 10.1016/j.bpj.2012.12.034 Cited 37 times

B.T. Walters, "Large protein folding and dynamics studied by advanced hydrogen exchange methods," Masters, University of Pennsylvania, 2013.

Benjamin T. Walters, Leland Mayne, James R. Hinshaw, Tobin R. Sosnick, S. Walter Englander, "Folding of a large protein at high structural resolution," Proc. Natl. Acad. Sci. USA 110 (47), 18898-18903 (2013). DOI: 10.1073/pnas.1319482110 Cited 75 times

William Wan, Wen Bian, Michele McDonald, Aleksandra Kijac, David E. Wemmer, Gerald Stubbs, "Heterogeneous Seeding of a Prion Structure by a Generic Amyloid Form of the Fungal Prion-forming Domain HET-s(218–289)," J. Biol. Chem. 288 (41), 29604-29612 (2013). DOI: 10.1074/jbc.M113.505511 Cited 13 times

C. David Williams, Mary K. Salcedo, Thomas C. Irving, Michael Regnier, Thomas L. Daniel, "The length–tension curve in muscle depends on lattice spacing," P. Roy. Soc. B. -- Biol. Sci. 280 (1766), 20130697 (2013). DOI: 10.1098/rspb.2013.0697 Cited 81 times

Nathan J. Baird, Adrian R. Ferré-D’Amaré, "Analysis of Riboswitch Structure and Ligand Binding Using Small-Angle X-ray Scattering (SAXS)," Therapeutic Applications of Ribozymes and Riboswitches, D. Lafontaine, A.Dubé, eds., Humana Press, 2014, 211 - 225. DOI: 10.1007/978-1-62703-730-3_16

R.A. Barrea, O. Antipova, D. Gore, R. Heurich, M. Vukonich, N.G. Kujala, T.C. Irving, J.P.R.O. Orgel, "X-ray micro-diffraction studies on biological samples at the BioCAT Beamline 18-ID at the Advanced Photon Source," J. Synchrotron Rad. 21 (5), 1200-1205 (2014). DOI: 10.1107/S1600577514012259 Cited 6 times

Jo A. Capp, Andrew Hagarman, David C. Richardson, Terrence G. Oas, "The statistical conformation of a highly flexible protein: small-angle X-ray scattering of S. aureus protein A," Structure 22 (5), 1184-1195 (2014). DOI: 10.1016/j.str.2014.06.011 Cited 18 times

Alaina S. DeToma, Christine M. Dengler-Crish, Aniruddha Deb, Joseph J. Braymer, James E. Penner-Hahn, Cornelis J. van der Schyf, Mi Hee Lim, Samuel D. Crish, "Abnormal metal levels in the primary visual pathway of the DBA/2J mouse model of glaucoma," BioMetals 27 (6), 1291-1301 (2014). DOI: 10.1007/s10534-014-9790-z Cited 17 times

Rachel L. French, Nirupama Gupta, Paul R. Copeland, Miljan Simonović, "Structural Asymmetry of the Terminal Catalytic Complex in Selenocysteine Synthesis," J. Biol. Chem. 289 (42), 28783-28794 (2014). DOI: 10.1074/jbc.M114.597955 Cited 12 times

Guillermina M. Goñi, Carolina Epifano, Jasminka Boskovic, Marta Camacho-Artacho, Jing Zhou, Agnieszka Bronowska, M. Teresa Martín, Michael J. Eck, Leonor Kremer, Frauke Gräter, Francesco Luigi Gervasio, Mirna Perez-Moreno, Daniel Lietha, "Phosphatidylinositol 4,5-bisphosphate triggers activation of focal adhesion kinase by inducing clustering and conformational changes," Proc. Natl. Acad. Sci. USA 111 (31), E3177-E3186 (2014). DOI: 10.1073/pnas.1317022111 Cited 107 times

Kushol Gupta, Lydia M. Contreras, Dorie Smith, Guosheng Qu, Tao Huang, Lynn A. Spruce, Steven H. Seeholzer, Marlene Belfort, Gregory D. Van Duyne, "Quaternary arrangement of an active, native group II intron ribonucleoprotein complex revealed by small-angle X-ray scattering," Nucleic Acids Res. 42 (8), 5347-5360 (2014). DOI: 10.1093/nar/gku140 Cited 15 times

KH Hsu, "The structural basis of myofilament length dependent activation," Ph.D., Illinois Institute of Technology, 2014.

Rong Huang, Thomas Szebenyi, Mark Pfeifer, Arthur Woll, Detlef-M. Smilgies, Kenneth Finkelstein, Darren Dale, Yuxin Wang, Joan Vila-Comamala, Richard Gillilan, Michael Cook, Donald H. Bilderback, "Application of CHESS single-bounce capillaries at synchrotron beamlines," J. Phys. Conf. Series 493 (1), 012034-1- 012034-4 (2014). DOI: 10.1088/1742-6596/493/1/012034 Cited 5 times

Veronica J. James, Judith M. O’Malley Ford, "Fibre Diffraction Analysis of Skin Offers a Very Early and Extremely Accurate Diagnostic Test for Prostate Cancer," J. Can. Res. 2014, 179608-1-179608-6 (2014). DOI: 10.1155/2014/179608

Lianying Jiao, Songying Ouyang, Neil Shaw, Gaojie Song, Yingang Feng, Fengfeng Niu, Weicheng Qiu, Hongtao Zhu, Li-Wei Hung, Xiaobing Zuo, Eleonora V. Shtykova, Ping Zhu, Yu-Hui Dong, Ruxiang Xu, Zhi-Jie Liu, "Mechanism of the Rpn13-induced activation of Uch37," Protein Cell 5 (8), 616-630 (2014). DOI: 10.1007/s13238-014-0046-z Cited 29 times

Sagar V. Kathuria, Can Kayatekin, Raul Barrea, Elena Kondrashkina, Rita Graceffa, Liang Guo, R. Paul Nobrega, Srinivas Chakravarthy, C. Robert Matthews, Thomas C. Irving, Osman Bilsel, "Microsecond Barrier-Limited Chain Collapse Observed by Time-Resolved FRET and SAXS," J. Mol. Biol. 426 (9), 1980-1994 (2014). DOI: 10.1016/j.jmb.2014.02.020 Cited 39 times

John V. King, Wenguang G. Liang, Kathryn P. Scherpelz, Alexander B. Schilling, Stephen C. Meredith, Wei-Jen Tang, "Molecular Basis of Substrate Recognition and Degradation by Human Presequence Protease," Structure 22 (7), 996-1007 (2014). DOI: 10.1016/j.str.2014.05.003 Cited 37 times

Andrew W. Malaby, "An Integrated Structural Mechanism for Relief of Autoinhibition and Membrane Targeting in Cytohesin Family Guanine Nucleotide Exchange Factors: A Dissertation," Masters, University of Massachusetts Medical School, 2014.

Steven O. Mansoorabadi, Meilan Wu, Zhihua Tao, Peng Gao, Sai Venkatesh Pingali, Liang Guo, Hung-wen Liu, "Conformational Activation of Poly(ADP-ribose) Polymerase-1 upon DNA Binding Revealed by Small-Angle X-ray Scattering," Biochemistry-US 53 (11), 1779-1788 (2014). DOI: 10.1021/bi401439n Cited 22 times

Robert P. Nobrega, "Early Folding Biases in the Folding Free-Energy Surface of [beta alpha]-Repeat Proteis: A Dissertation," Ph.D., University of Massachusettes, 2014.

R. Paul Nobrega, Karunesh Arora, Sagar V. Kathuria, Rita Graceffa, Raul A. Barrea, Liang Guo, Srinivas Chakravarthy, Osman Bilsel, Thomas C. Irving, Charles L. Brooks, III., C. Robert Matthews, "Modulation of frustration in folding by sequence permutation," Proc. Natl. Acad. Sci. USA 111 (29), 10562-10567 (2014). DOI: 10.1073/pnas.1324230111 Cited 20 times

Joseph P.R.O. Orgel, Anton V. Persikov, Olga Antipova, "Variation in the Helical Structure of Native Collagen," PLoS One 9 (2), e89519-1-e89519-11 (2014). DOI: 10.1371/journal.pone.0089519 Cited 41 times

Krzysztof J. Podkowa, Lee-Ann K. Briere, David E. Heinrichs, Brian H. Shilton, "Crystal and Solution Structure Analysis of FhuD2 from Staphylococcus aureus in Multiple Unliganded Conformations and Bound to Ferrioxamine-B," Biochemistry-US 53 (12), 2017-2031 (2014). DOI: 10.1021/bi401349d Cited 30 times

Catherine B. Poor, Seraphine V. Wegner, Haoran Li, Adrienne C. Dlouhy, Jonathan P. Schuermann, Ruslan Sanishvili, James R. Hinshaw, Pamela J. Riggs-Gelasco, Caryn E. Outten, Chuan He, "Molecular mechanism and structure of the Saccharomyces cerevisiae iron regulator Aft2," Proc. Natl. Acad. Sci. USA 111 (11), 4043-4048 (2014). DOI: 10.1073/pnas.1318869111 Cited 84 times

Taylor A Poor, "Metastable Paramyxovirus Fusion Proteins: Analysis of a Viral Molecular Machine," Ph.D., Northwestern University, 2014.

Gregory A. Robison, "Study of manganese distribution and transport in the rodent brain using X-ray Fluorescence Imaging and spectroscopy," Ph.D., Purdue University, 2014.

Kathryn Scherpelz, "Alzheimer’s brain-and meninges-seeded amyloid fibrils," Ph.D., University of Chicago, 2014.

O'Neil M. Shand, "The Role of Molecular Hinges in the Structure and Function of Iron Regulatory Protein 1," Ph.D., UIC, 2014.

John J. Skinner, Wookyung Yu, Elizabeth K. Gichana, Michael C. Baxa, James R. Hinshaw, Karl F. Freed, Tobin R. Sosnick, "Benchmarking all-atom simulations using hydrogen exchange," Proc. Natl. Acad. Sci. USA 111 (45), 15975-159780 (2014). DOI: 10.1073/pnas.1404213111 Cited 66 times

William Wan, "Structure and Assembly of the Fungal Prion-Forming Domain HET -s (218-289)," Ph.D., Vanderbilt University, 2014.

William Wan, Gerald Stubbs, "Heterogeneous seeding of HET-s(218–289) and the mutability of prion structures," Prion 8 (2), online (2014). DOI: 10.4161/pri.28126 Cited 3 times

William Wan, Gerald Stubbs, "Fiber Diffraction of the Prion-Forming Domain HET-s(218–289) Shows Dehydration-Induced Deformation of a Complex Amyloid Structure," Biochemistry-US 53 (14), 2366-2370 (2014). DOI: 10.1021/bi5002807 Cited 8 times

William Wan, Gerald Stubbs, "Fungal prion HET-s as a model for structural complexity and self-propagation in prions," Proc. Natl. Acad. Sci. USA 111 (14), 5201-5206 (2014). DOI: 10.1073/pnas.1322933111 Cited 26 times

Namthip Witayavanitkul, Younss Ait Mou, Diederik W.D. Kuster, Ramzi J. Khairallah, Jason Sarkey, Suresh Govindan, Xin Chen, Ying Ge, Sudarsan Rajan, David F. Wieczorek, Thomas Irving, Margaret V. Westfall, Pieter P. de Tombe, Sakthivel Sadayappan, "Myocardial Infarction-induced N-terminal Fragment of Cardiac Myosin-binding Protein C (cMyBP-C) Impairs Myofilament Function in Human Myocardium," J. Biol. Chem. 289 (13), 8818-8827 (2014). DOI: 10.1074/jbc.M113.541128 Cited 38 times

Sichun Yang, "Methods for SAXS-Based Structure Determination of Biomolecular Complexes," Adv. Mater. 26 (46), 7902-7910 (2014). DOI: 10.1002/adma.201304475 Cited 39 times

Cedric Zeltz, Joseph Orgel, Donald Gullberg, "Molecular composition and function of integrin-based collagen glues—Introducing COLINBRIs," BBA - General Subjects 1840 (8), 2533-2548 (2014). DOI: 10.1016/j.bbagen.2013.12.022 Cited 59 times

Isabel Askenasy, Joseph M. Pennington, Yeqing Tao, Alan G. Marshall, Nicolas L. Young, Weifeng Shang, M. Elizabeth Stroupe, "The N-terminal Domain of Escherichia coli Assimilatory NADPH-Sulfite Reductase Hemoprotein Is an Oligomerization Domain That Mediates Holoenzyme Assembly," J. Biol. Chem. 290 (31), 19319-19333 (2015). DOI: 10.1074/jbc.M115.662379 Cited 10 times

Benjamin W. Cook, Kathryn R. Barber, Brian H. Shilton, Gary S. Shaw, "The HIP2~ubiquitin conjugate forms a non-compact monomeric thioester during di-ubiquitin synthesis," PLoS One 10 (3), e0120318-1-e0120318-14 (2015). DOI: 10.1371/journal.pone.0120318

Andrew Crawford, "Methodologies in XRF Cytometry," Ph.D., University of Michigan, 2015.

Eugenio De la Mora, Edith Flores-Hernández, Jean Jakoncic, Vivian Stojanoff, Dritan Siliqi, Nuria Sánchez-Puig, Abel Moreno, "SdsA polymorph isolation and improvement of their crystal quality using nonconventional crystallization techniques," J. Appl. Crystallogr. 48 (5), 1551-1559 (2015). DOI: 10.1107/S1600576715016556 Cited 5 times

Rebecca Deprez-Poulain, Nathalie Hennuyer, Damien Bosc, Wenguang G. Liang, Emmanuelle Enée, Xavier Marechal, Julie Charton, Jane Totobenazara, Gonzague Berte, Jouda Jahklal, Tristan Verdelet, Julie Dumont, Sandrine Dassonneville, Eloise Woitrain, Marion Gauriot, Charlotte Paquet, Isabelle Duplan, Paul Hermant, François- Xavier Cantrelle, Emmanuel Sevin, Maxime Culot, Valerie Landry, Adrien Herledan, Catherine Piveteau, Guy Lippens, Florence Leroux, Wei-Jen Tang, Peter van Endert, Bart Staels, Benoit Deprez , "Catalytic site inhibition of insulin-degrading enzyme by a small molecule induces glucose intolerance in mice," Nat. Commun. 6, 8250-1-8250-12 (2015). DOI: 10.1038/ncomms9250 Cited 72 times

Rachel L. French, "The Terminal Catalytic Complex of Selenocysteine Synthesis and its Role in Neurodegenerative Disorders," Ph.D., University of Illinois at Chicago, 2015.

Frank Heinrich, Srinivas Chakravarthy, Hirsh Nanda, Antonella Papa, Pier Paolo Pandolfi, Alonzo H. Ross, Rakesh K. Harishchandra, Arne Gericke, Mathias Lösche, "The PTEN Tumor Suppressor Forms Homodimers in Solution," Structure 23 (10), 1952-1957 (2015). DOI: 10.1016/j.str.2015.07.012 Cited 29 times

Kaitlyn M. Holman, "The mechanism of substrate recognition by promiscuous aminoacyl-tRNA synthetases," Ph.D., University of Illinois Chicago, 2015.

Tiancen Hu, Jennifer E. Yeh, Luca Pinello, Jaison Jacob, Srinivas Chakravarthy, Guo-Cheng Yuan, Rajiv Chopra, David A. Frank, "Impact of the N-Terminal Domain of STAT3 in STAT3-Dependent Transcriptional Activity," Mol. Cell Biol. 35 (19), 3284-3300 (2015). DOI: 10.1128/MCB.00060-15 Cited 44 times

W. Huang, "Molecular Mechanisms of Myosin Light Chain Mutation-Induced Cardiomyopathies," Masters, University of Miami, 2015.

Jaime L. Jensen, Andrea Balbo, David B. Neau, Srinivas Chakravarthy, Huaying Zhao, Sangita C. Sinha, Christopher L. Colbert, "Mechanistic Implications of the Unique Structural Features and Dimerization of the Cytoplasmic Domain of the Pseudomonas Sigma Regulator, PupR," Biochemistry-US 54 (38), 5867-5877 (2015). DOI: 10.1021/acs.biochem.5b00826 Cited 8 times

Hui-Ting Lee, Duncan Kilburn, Reza Behrouzi, Robert M. Briber, Sarah A. Woodson, "Molecular crowding overcomes the destabilizing effects of mutations in a bacterial ribozyme," Nucleic Acids Res. 43 (2), 1170-1176 (2015). DOI: 10.1093/nar/gku1335 Cited 26 times

Young-Tae Lee, Garrett Gibbons, Shirley Y. Lee, Zaneta Nikolovska-Coleska, Yali Dou, "One-pot refolding of core histones from bacterial inclusion bodies allows rapid reconstitution of histone octamer," Protein Expres. Purif. 110, 89-94 (2015). DOI: 10.1016/j.pep.2015.02.007 Cited 19 times

K.K.K. Leung, "Quinone Reductase 2 is a Flavin Redox Switch," Ph.D., University of Western Ontario, 2015.

Wenguang G. Liang, Min Ren, Fan Zhao, Wei-Jen Tang, "Structures of Human CCL18, CCL3, and CCL4 Reveal Molecular Determinants for Quaternary Structures and Sensitivity to Insulin-Degrading Enzyme," J. Mol. Biol. 427 (6B), 1345-1358 (2015). DOI: 10.1016/j.jmb.2015.01.012 Cited 21 times

R.S. Madhurapantula, "Studies on connective and neurological tissues in relation to disease," Ph.D., Illinois Institute of Technology, 2015.

Andrew W. Malaby, Srinivas Chakravarthy, Thomas C. Irving, Sagar V. Kathuria, Osman Bilsel, David G. Lambright, "Methods for analysis of size-exclusion chromatography-small-angle X-ray scattering and reconstruction of protein scattering," J. Appl. Crystallogr. 48 (4), 1102-1113 (2015). DOI: 10.1107/S1600576715010420 Cited 43 times

Christopher E. Morgan, Jennifer L. Meagher, Jeffrey D. Levengood, James Delproposto, Carrie Rollins, Jeanne A. Stuckey, Blanton S. Tolbert, "The First Crystal Structure of the UP1 Domain of hnRNP A1 Bound to RNA Reveals a New Look for an Old RNA Binding Protein," J. Mol. Biol. 427 (20), 3241-3257 (2015). DOI: 10.1016/j.jmb.2015.05.009 Cited 30 times

Darrin Pochan, "Construction and Characterization of Hybrid Nanoparticles via Block Copolymer Blends and Kinetic Control of Solution Assembly," Ph.D., University of Delaware, 2015.

Madushi Raththagala, M. Kathryn Brewer, Matthew W. Parker, Amanda R. Sherwood, Brian K. Wong, Simon Hsu, Travis M. Bridges, Bradley C. Paasch, Lance M. Hellman, Satrio Husodo, David A. Meekins, Adam O. Taylor, Benjamin D. Turner, Kyle D. Auger, Vikas V. Dukhande, Srinivas Chakravarthy, Pascual Sanz, Virgil L. Woods, Jr., Sheng Li, Craig W. Vander Kooi, Matthew S. Gentry, "Structural Mechanism of Laforin Function in Glycogen Dephosphorylation and Lafora Disease," Mol. Cell 57 (2), 261-272 (2015). DOI: 10.1016/j.molcel.2014.11.020 Cited 48 times

Gregory Robison, Brendan Sullivan, Jason R. Cannon, Yulia Pushkar, "Identification of dopaminergic neurons of the substantia nigra pars compacta as a target of manganese accumulation," Metallomics 7 (5), 748-755 (2015). DOI: 10.1039/C5MT00023H Cited 34 times

William Wan, Jan Stöhr, Amy Kendall, Gerald Stubbs, "Truncated forms of the prion protein PrP demonstrate the need for complexity in prion structure," Prion 9 (5), 333-338 (2015). DOI: 10.1080/19336896.2015.1084464 Cited 2 times

William Wan, Holger Wille, Jan Stöhr, Amy Kendall, Wen Bian, Michele McDonald, Sarah Tiggelaar, Joel C. Watts, Stanley B. Prusiner, Gerald Stubbs, "Structural Studies of Truncated Forms of the Prion Protein PrP," Biophys. J. 108 (6), 1548-1554 (2015). DOI: 10.1016/j.bpj.2015.01.008 Cited 22 times

Jonathan W. Willett, Julien Herrou, Ariane Briegel, Grant Rotskoff, Sean Crosson, "Structural asymmetry in a conserved signaling system that regulates division, replication, and virulence of an intracellular pathogen," Proc. Natl. Acad. Sci. USA 112 (28), E3709-E3718 (2015). DOI: 10.1073/pnas.1503118112 Cited 43 times

Shuqin Xia, Yunqi Li, Qiuyang Xia, Xiaoming Zhang, Qingrong Huang, "Glycosylation of bovine serum albumin via Maillard reaction prevents epigallocatechin-3-gallate-induced protein aggregation," Food Hydrocolloid 43, 228-235 (2015). DOI: 10.1016/j.foodhyd.2014.05.022 Cited 53 times

Shuqin Xia, Yunqi Li, Qin Zhao, Ji Li, Qiuyang Xia, Xiaoming Zhang, Qingrong Huang, "Probing Conformational Change of Bovine Serum Albumin–Dextran Conjugates under Controlled Dry Heating," J. Agric. Food Chem. 63 (16), 4080-4086 (2015). DOI: 10.1021/jf506267r Cited 40 times

Jie Xiao, Yunqi Li, Ji Li, Alejandro Perez Gonzalez, Qiuyang Xia, Qingrong Huang, "Structure, Morphology, and Assembly Behavior of Kafirin," J. Agric. Food Chem. 63 (1), 216-224 (2015). DOI: 10.1021/jf504674z Cited 90 times

Ravi P. Yadav, Anurima Majumder, Lokesh Gakhar, Nikolai O. Artemyev, "Extended conformation of the proline-rich domain of human aryl hydrocarbon receptor-interacting protein-like 1: implications for retina disease," J. Neurochem. 135 (1), 165-175 (2015). DOI: 10.1111/jnc.13223 Cited 18 times

Chen-Ching Yuan, Priya Muthu, Katarzyna Kazmierczak, Jingsheng Liang, Wenrui Huang, Thomas C. Irving, Rosemeire M. Kanashiro-Takeuchi, Joshua M. Hare, Danuta Szczesna-Cordary, "Constitutive phosphorylation of cardiac myosin regulatory light chain prevents development of hypertrophic cardiomyopathy in mice," Proc. Natl. Acad. Sci. USA 112 (30), E4138-E4146 (2015). DOI: 10.1073/pnas.1505819112 Cited 61 times

Hao Zhou, Shangyang Li, John Badger, Ellen Nalivaika, Yufeng Cai, Jennifer Foulkes-Murzycki, Celia Schiffer, Lee Makowski, "Modulation of HIV protease flexibility by the T80N mutation," Proteins 83 (11), 1929-1939 (2015). DOI: 10.1002/prot.24737 Cited 6 times

Younss Ait-Mou, Karen Hsu, Gerrie P. Farman, Mohit Kumar, Marion L. Greaser, Thomas C. Irving, Pieter P. de Tombe, "Titin strain contributes to the Frank–Starling law of the heart by structural rearrangements of both thin- and thick-filament proteins," Proc. Natl. Acad. Sci. USA 113 (8), 2306-2311 (2016). DOI: 10.1073/pnas.1516732113 Cited 141 times

S. Antipov, S.V. Baryshev, J.E. Butler, O. Antipova, Z. Liu, S. Stoupin, "Two-dimensional Single Crystal Diamond Refractive X-Ray Lens," SRI2015, 1741, AIP (2016), 040017-1 - 040017-4. DOI: 10.1063/1.4952889

S. Antipov, S.V. Baryshev, J.E. Butler, O. Antipova, Z. Liu, S. Stoupin, "Single-crystal diamond refractive lens for focusing X-rays in two dimensions," J. Synchrotron Rad. 23 (1), 163-168 (2016). DOI: 10.1107/S1600577515020639 Cited 24 times

Shaoshuai Chen, "The length-tension curve of and lattice spacing changes in skinned flight muscle in Manduca sexta," Ph.D., Illinois Institute of Technology, 2016.

Andrew M. Crawford, Patrick Kurecka, Tsz Kwan Yim, Claire Kozemchak, Aniruddha Deb, Lubomír Dostál, Cheng-Jun Sun, Dale L. Brewe, Raul Barrea, James E. Penner-Hahn, "Development of a single-cell X-ray fluorescence flow cytometer," J. Synchrotron Rad. 23 (4), 901-908 (2016). DOI: 10.1107/S1600577516008006 Cited 9 times

Malgorzata Dobosz-Bartoszek, "Structural and biochemical studies of the human selenocysteine tRNA-specific elongation factor eEFSec," Ph.D., University of Illinois at Chicago, 2016.

Malgorzata Dobosz-Bartoszek, Mark H. Pinkerton, Zbyszek Otwinowski, Srinivas Chakravarthy, Dieter Söll, Paul R. Copeland, Miljan Simonović, "Crystal structures of the human elongation factor eEFSec suggest a non-canonical mechanism for selenocysteine incorporation," Nat. Commun. 7, 12941-1-12941-11 (2016). DOI: 10.1038/ncomms12941 Cited 24 times

Malgorzata Dobosz-Bartoszek, Miljan Simonović, "Structure and Mechanism of Selenocysteine Synthases," Selenium, D.L. Hatfield, U. Schweizer, P.A. Tsuji, V.N. Gladyshev, eds., Springer, 2016, 101 - 112. DOI: 10.1007/978-3-319-41283-2_9

J.R. Fuller, "DNA Dynamics and Irreversibility Regulate Mu Transposition," Ph.D., University of Chicago, 2016.

Jesse Hopkins, "Development Of Low Temperature Biological Small Angle X-Ray Scattering, Cryosaxs, And Study Of Ice Formation In Aqueous Solutions," Ph.D., Cornell University, 2016.

Wei Huang, Krishnakumar M. Ravikumar, Marc Parisien, Sichun Yang, "Theoretical modeling of multiprotein complexes by iSPOT: Integration of small-angle X-ray scattering, hydroxyl radical footprinting, and computational docking," J. Struct. Biol. 196 (3), 340-349 (2016). DOI: 10.1016/j.jsb.2016.08.001 Cited 27 times

Niyati Jain, Christopher E. Morgan, Brittany D. Rife, Marco Salemi, Blanton S. Tolbert, "Solution Structure of the HIV-1 Intron Splicing Silencer and Its Interactions with the UP1 Domain of Heterogeneous Nuclear Ribonucleoprotein (hnRNP) A1," J. Biol. Chem. 291 (5), 2331-2344 (2016). DOI: 10.1074/jbc.M115.674564 Cited 21 times

Sibel Kalyoncu, David P . Heaner, Jr, Zohre Kurt, Casey M. Bethel, Chiamaka U. Ukachukwu, Srinivas Chakravarthy, Jim C. Spain, Raquel L. Lieberman , "Enzymatic hydrolysis by transition-metal-dependent nucleophilic aromatic substitution," Nat. Chem. Biol. 12, 1031-1036 (2016). DOI: 10.1038/nchembio.2191 Cited 11 times

Ali Khounsary, Anoop Chandrashekarappa, Anthony Llodra, Mikhail Antimonov, Carlo U. Segre, Sudhakar E. Nair, Thomas C. Irving, "Development of a multilayer monochromator system for the BioCAT beamline," SPIE OPTICAL ENGINEERING + APPLICATIONS, Ali M. Khounsary, Shunji Goto, Christian Morawe, eds., 9963, SPIE, (2016), 99630W-1 - 99630W-9. DOI: 10.1117/12.2238929 Cited 2 times

Duncan Kilburn, Reza Behrouzi, Hui-Ting Lee, Krishnarjun Sarkar, Robert M. Briber, Sarah A. Woodson, "Entropic stabilization of folded RNA in crowded solutions measured by SAXS," Nucleic Acids Res. 44 (19), 9452-9461 (2016). DOI: 10.1093/nar/gkw597 Cited 21 times

Wenguang G. Liang, Catherine G. Triandafillou, Teng-Yi Huang, Medel Manuel L. Zulueta, Shiladitya Banerjee, Aaron R. Dinner, Shang-Cheng Hung, Wei-Jen Tang, "Structural basis for oligomerization and glycosaminoglycan binding of CCL5 and CCL3," Proc. Natl. Acad. Sci. USA 113 (18), 5000-5005 (2016). DOI: 10.1073/pnas.1523981113 Cited 59 times

Weikang Ma, "Elastic elements in the sarcomeres of striated muscle," Ph.D., Illinois Institute of Technology, 2016.

Brian C. Mackness, "The Identification and Targeting of Partially-Folded Conformations on the Folding Free-Energy Landscapes of ALS-Linked Proteins for Therapeutic Intervention: A Dissertation," Ph.D., University of Massachusettes, 2016.

Yang Mei, Karen Glover, Minfei Su, Sangita C. Sinha, "Conformational flexibility of BECN1: Essential to its key role in autophagy and beyond.," Protein Sci. 25 (10), 1767-1785 (2016). DOI: 10.1002/pro.2984 Cited 68 times

Yang Mei, Arvind Ramanathan, Karen Glover, Christopher Stanley, Ruslan Sanishvili, Srinivas Chakravarthy, Zhongyu Yang, Christopher L. Colbert, Sangita C. Sinha, "Conformational Flexibility Enables the Function of a BECN1 Region Essential for Starvation-Mediated Autophagy," Biochemistry-US 55 (13), 1945-1958 (2016). DOI: 10.1021/acs.biochem.5b01264 Cited 18 times

Yang Mei, Minfei Su, Ruslan Sanishvili, Srinivas Chakravarthy, Christopher L. Colbert, Sangita C. Sinha, "Identification of BECN1 and ATG14 Coiled-Coil Interface Residues That Are Important for Starvation-Induced Autophagy," Biochemistry-US 55 (30), 4239-4253 (2016). DOI: 10.1021/acs.biochem.6b00246 Cited 23 times

Srboljub M. Mijailovich, Oliver Kayser-Herold, Boban Stojanovic, Djordje Nedic, Thomas C. Irving, MA Geeves, "Three-dimensional stochastic model of actin-myosin binding in the sarcomere lattice," J. Gen. Physiol. 148 (6), 459-488 (2016). DOI: 10.1085/jgp.201611608 Cited 55 times

Giora I. Morozov, Huaying Zhao, Michael G. Mage, Lisa F. Boyd, Jiansheng Jiang, Michael A. Dolan, Ramesh Venna, Michael A. Norcross, Curtis P. McMurtrey, William Hildebrand, Peter Schuck, Kannan Natarajan, David H. Margulies, "Interaction of TAPBPR, a tapasin homolog, with MHC-I molecules promotes peptide editing," Proc. Natl. Acad. Sci. USA 113 (8), E1006-E1015 (2016). DOI: 10.1073/pnas.1519894113 Cited 69 times

U. Muthurajan, F. Mattiroli, S. Bergeron, K. Zhou, Y. Gu, S. Chakravarthy, P. Dyer, T. Irving, K. Luger, "In Vitro Chromatin Assembly: Strategies and Quality Control," Methods in Enzymology, R. Marmorstein, eds., Elsevier, 2016, 3 - 41. DOI: 10.1016/bs.mie.2016.01.002 Cited 36 times

Annie D. Palaparthi, "Potential applications of lipid nanoparticles in edible packaging and nutraceutical delivery," Ph.D., Rutgers University, 2016.

Stephen J. Perkins, David W Wright, Hailiang Zhang, Emre H. Brookes, Jianhan Chen, Thomas C. Irving, Ssusan Krueger, David J. Barlow, Karen J. Edler, David J. Scott, Nicholas J. Terrill, Stephen M. King, Paul D. Butler, Joseph E. Curtis, "Atomistic modelling of scattering data in the Collaborative Computational Project for Small Angle Scattering (CCP-SAS)," J. Appl. Crystallogr. 49 (6), 1861-1875 (2016). DOI: 10.1107/S160057671601517X Cited 65 times

Grace H. Pham, Ambar S.J.B. Rana, E. Nihal Korkmaz, Vivian H. Trang, Qiang Cui, Eric R. Striete, "Comparison of native and non-native ubiquitin oligomers reveals analogous structures and reactivities," Protein Sci. 25 (2), 456-471 (2016). DOI: 10.1002/pro.2834 Cited 14 times

Momcilo Prodanovic, Thomas C. Irving, Srboljub M. Mijailovich, "X-ray diffraction from nonuniformly stretched helical molecules," J. Appl. Crystallogr. 49 (3), 784-797 (2016). DOI: 10.1107/S1600576716003757 Cited 10 times

Anupama K. Puppala, Rachel L. French, Doreen Matthies, Ulrich Baxa, Sriram Subramaniam, Miljan Simonović, "Structural basis for early-onset neurological disorders caused by mutations in human selenocysteine synthase," Sci. Rep. 6, 32563-1-32563-12 (2016). DOI: 10.1038/srep32563 Cited 16 times

Minfei Su, "Structural Studies of the Mechanism by Which BCL-2 and Beclin Proteins Regulate Autophagy and Apoptosis," Ph.D., North Dakota State University, 2016.

Brendan Sullivan, "Characterization of Cu-rich aggregates in neurogenic niches of the rodent brain by X-ray fluorescence microscopy," Ph.D., Purdue University, 2016.

Magdalena Szymusiak, "Design, Formation, and Characterization of Polymeric Nanoparticles for Drug Delivery," Ph.D., University of Illinois Chicago, 2016.

Dudu Tong, Sichun Yang, Lanyuan Lu, "Accurate optimization of amino acid form factors for computing small-angle X-ray scattering intensity of atomistic protein structures," J. Appl. Crystallogr. 49 (4), 1148-1161 (2016). DOI: 10.1107/S1600576716007962 Cited 15 times

K.C. Vavra, "Defining Myosin-10 Navigation Rules," Ph.D., University of Chicago, 2016.

Yujing Wang, "Molecular dynamics of adenylate kinase in different conformational transition states," Ph.D., Northeastern University, 2016.

C. David Williams, Magdalena Balazinska, Thomas L. Daniel, "Automated Analysis of Muscle X-ray Diffraction Imaging with MCMC," Lecture Notes in Computer Science, G. Goos, J. Hartmanis, eds., Springer, 2016, 126 - 133. DOI: 10.1007/978-3-319-41576-5_9 Cited 1 times

Z. XU, "Auto-inhibition mechanism of the guanine nucleotide exchange factor Tiam1," Ph.D., University of Iowa, 2016.

Jie Xiao, "Kafirin protein and its applications in nanoencapsulation, pickering emulsion and electrospun fiber," Ph.D., Rutgers University, 2016.

Jie Xiao, Ce Shi, Li Zhang, Yunqi Li, Junru Qi, Yan Wang, Qingrong Huang, "Multilevel structural responses of [beta]-conglycinin and glycinin under acidic or alkaline heat treatment," Food Res. Int. 89 (1), 540-548 (2016). DOI: 10.1016/j.foodres.2016.09.006 Cited 29 times

Jie Xiao, Ce Shi, Huijuan Zheng, Zhen Shi, Dong Jiang, Yunqi Li, Qingrong Huang, "Kafirin Protein Based Electrospun Fibers with Tunable Mechanical Property, Wettability, and Release Profile," J. Agric. Food Chem. 64 (16), 3226-3233 (2016). DOI: 10.1021/acs.jafc.6b00388 Cited 44 times

Ming Yan, Srinivas Chakravarthy, Joshua M. Tokuda, Lois Pollack, Gregory D. Bowman, Young-Sam Lee, "Succinyl-5-aminoimidazole-4-carboxamide-1-ribose 5′-Phosphate (SAICAR) Activates Pyruvate Kinase Isoform M2 (PKM2) in Its Dimeric Form," Biochemistry-US 55 (33), 4731-4736 (2016). DOI: 10.1021/acs.biochem.6b00658 Cited 22 times

S. Bowerman, A.S.J.B. Rana, A. Rice, G.H. Pham, E.R. Strieter, J. Wereszczynski, "Determining Atomistic SAXS Models of Tri-Ubiquitin Chains from Bayesian Analysis of Accelerated Molecular Dynamics Simulations," J. Chem. Theory Comput. 13 (6), 2418-2429 (2017). DOI: 10.1021/acs.jctc.7b00059 Cited 15 times

Maria Monica Castellanos, James A. Snyder, Melody Lee, Srinivas Chakravarthy, Nicholas J. Clark, Arnold McAuley, Joseph E. Curtis, "Characterization of Monoclonal Antibody–Protein Antigen Complexes Using Small-Angle Scattering and Molecular Modeling," Antibodies 6 (4), 25-1-25 (2017). DOI: 10.3390/antib6040025 Cited 10 times

Maggie H. Chassé, Uma M. Muthurajan, Nicholas J. Clark, Michael A. Kramer, Srinivas Chakravarthy, Thomas Irving, Karolin Luger, "Biochemical and Biophysical Methods for Analysis of Poly(ADP-Ribose) Polymerase 1 and Its Interactions with Chromatin," Methods Mol. Biol. 1608, 231-253 (2017). DOI: 10.1007/978-1-4939-6993-7_16

Yujie Chen, Joshua M. Tokuda, Traci Topping, Steve P. Meisburger, Suzette A. Pabit, Lisa M. Gloss, Lois Pollack, "Asymmetric unwrapping of nucleosomal DNA propagates asymmetric opening and dissociation of the histone core," Proc. Natl. Acad. Sci. USA 114 (2), 334-339 (2017). DOI: 10.1073/pnas.1611118114 Cited 77 times

IAF Del Carmen, "Structural and Functional Characterization of Escherichia Coli Assimilatory Sulfite Reductase," Ph.D., Florida State University, 2017.

June Ereño-Orbea, Taylor Sicard, Hong Cui, Mohammad T. Mazhab-Jafari, Samir Benlekbir, Alba Guarné, John L. Rubinstein, Jean-Philippe Julien, "Molecular basis of human CD22 function and therapeutic targeting," Nat. Commun. 8, 764-1-764-11 (2017). DOI: 10.1038/s41467-017-00836-6 Cited 111 times

Xuan Fang, Pingdong Liang, Daniel Alexander Raba, Monica Rosas-Lemus, Srinivas Chakravarthy, Karina Tuz, Oscar Juárez, "Kinetic characterization of Vibrio cholerae ApbE: Substrate specificity and regulatory mechanisms," PLoS One 12 (10), e0186805-1-e0186805-20 (2017). DOI: 10.1371/journal.pone.0186805 Cited 6 times

G. Forlani, B. Nocek, S. Chakravarthy, A. Joachimiak, "Functional Characterization of Four Putative [delta superscript 1]-Pyrroline-5-Carboxylate Reductases from Bacillus subtilis.," Front. Microbio. 8, 1442-1 (2017). DOI: 10.3389/fmicb.2017.01442 Cited 11 times

Zachary P. Gates, Michael C. Baxab, Wookyung Yub, Joshua A. Riback, Hui Li, Benoît Roux, Stephen B.H. Kent, Tobin R. Sosnick, "Perplexing cooperative folding and stability of a low-sequence complexity, polyproline 2 protein lacking a hydrophobic core," Proc. Natl. Acad. Sci. USA 114 (9), 2241-2246 (2017). DOI: 10.1073/pnas.1609579114 Cited 26 times

Karen Glover, Yue Li, Shreya Mukhopadhyay, Zoe Leuthner, Srinivas Chakravarthy, Christopher L. Colbert, Sangita C. Sinha, "Structural transitions in conserved, ordered Beclin 1 domains essential to regulating autophagy," J. Biol. Chem. 292 (39), 16235-16248 (2017). DOI: 10.1074/jbc.M117.804195 Cited 12 times

Kevin T. Halloran, "Exploring the Role of Large Clusters of Branched Aliphatic Residues on the Folding Free Energy Landscape of ([beta alpha])8 TIM Barrel Proteins," Ph.D., University of Massachusetts , 2017.

S.E. Hill, E. Nguyen, R.K. Donegan, A.C. Patterson-Orazem, A. Hazel, J.C. Gumbart, R.L. Lieberman., "Structure and misfolding of the flexible tripartite coiled coil domain of glaucoma-associated myocilin," Structure 25 (11), 1697-1707 (2017). DOI: 10.1016/j.str.2017.09.008 Cited 25 times

An Hsieh, Lanyuan Lu, Mark R. Chance, Sichun Yang, "A Practical Guide to iSPOT Modeling: An Integrative Structural Biology Platform," B. Chaudhuri, I. Muñoz, S. Qian, V. Urban, eds.,Springer, 2017, 978-981-10-6037-3. DOI: 10.1007/978-981-10-6038-0_14 Cited 10 times

Jaime Lea Jensen, "Structural basis for the regulation of a conserved TonB-dependent iron transport system via cell-surface signaling in Gram-negative bacteria," Ph.D., North Dakota State University, 2017.

Yike Jiang, "Novel polysaccharide-polypeptides nanocomplexes," Ph.D., Rutgers University, 2017.

Jyotsana Lal, Marco Maccarini, Peter Fouquet, Nancy T. Ho, Chien Ho, Lee Makowski, "Modulation of hemoglobin dynamics by an allosteric effector," Protein Sci. 26 (3), 505-514 (2017). DOI: 10.1002/pro.3099 Cited 7 times

Yue Li, Minfei Su, Karen Glover, Srinivas Chakravarthy, Christopher L. Colbert, Beth Levine, Sangita C. Sinha, Yuting Zhao, "Structural insights into the interaction of the conserved mammalian proteins GAPR-1 and Beclin 1, a key autophagy protein," Acta Crystallogr. D 73 (9), 775-792 (2017). DOI: 10.1107/S2059798317011822 Cited 14 times

Rama S. Madhurapantula, Ashley Eidsmore, Charles Dean Modrich, Joseph P.R.O. Orgel, "New Methodology and Preliminary Data in the Characterization of the Muscle Tendon Junction of Mammalian Muscle Tissues," EMS Eng. Sci. J. 1 (1), online (2017).

Francesca Mattiroli, Yajie Gu, Jeremy L. Balsbaugh, Natalie G. Ahn, Karolin Luger, "The Cac2 subunit is essential for productive histone binding and nucleosome assembly in CAF-1," Sci. Rep. 73, 46274-1-46274-11 (2017). DOI: 10.1038/srep46274 Cited 21 times

K. Adam Morrow, Dara W. Frank, Ron Balczon, Troy Stevens, "The Pseudomonas aeruginosa Exoenzyme Y: A Promiscuous Nucleotidyl Cyclase Edema Factor and Virulence Determinant," Non-canonical Cyclic Nucleotides, R. Seifert, eds., Springer, 2017, 67 - 85. DOI: 10.1007/164_2016_5003

Younss Ait Mou, Alain Lacampagne, Thomas Irving, Valerie Scheuermann, Stephane Blot, Bijan Ghaleh, Pieter P. de Tombe, Olivier Cazorla, "Altered myofilament structure and function in dogs with Duchenne muscular dystrophy cardiomyopathy," J. Mol. Cell. Cardiol. 114, 345-353 (2017). DOI: 10.1016/j.yjmcc.2017.12.008 Cited 10 times

Emre Onuk, John Badger, Yu Jing Wang, Jaydeep Bardhan, Yasmin Chishti, Murat Akcakaya, Dana H. Brooks, Deniz Erdogmus, David D.L. Minh, Lee Makowski, "Effects of Catalytic Action and Ligand Binding on Conformational Ensembles of Adenylate Kinase," Biochemistry-US 56 (34), 4559-4567 (2017). DOI: 10.1021/acs.biochem.7b00351 Cited 15 times

Joseph P.R.O. Orgel, Ido Sella, Rama S. Madhurapantula, Olga Antipova, Yael Mandelberg, Yoel Kashman, Dafna Benayahu, Yehuda Benayahu, "Molecular and ultrastructural studies of a fibrillar collagen from octocoral (Cnidaria)," J. Exp. Biol. 220, 3327-3335 (2017). DOI: 10.1242/jeb.163824 Cited 16 times

Patrick K. O’Neil, Lynn G.L. Richardson, Yamuna D. Paila, Grzegorz Piszczek, Srinivas Chakravarthy, Nicholas Noinaj, Danny Schnell, "The POTRA domains of Toc75 exhibit chaperone-like function to facilitate import into chloroplasts," Proc. Natl. Acad. Sci. USA 114 (24), E4868-E4876 (2017). DOI: 10.1073/pnas.1621179114 Cited 41 times

Aishwarya Prakash, Kedar Moharana, Susan S. Wallace, Sylvie Doublié, "Destabilization of the PCNA trimer mediated by its interaction with the NEIL1 DNA glycosylase," Nucleic Acids Res. 45 (5), 2897-2909 (2017). DOI: 10.1093/nar/gkw1282 Cited 15 times

Yupeng Qui, Robert F. Levendosky, Srinivas Chakravarthy, Ashok Patel, Gregory D. Bowman, Sua Myong, "The Chd1 Chromatin Remodeler Shifts Nucleosomal DNA Bidirectionally as a Monomer," Mol. Cell 68 (1), 76-88 (2017). DOI: 10.1016/j.molcel.2017.08.018 Cited 43 times

Joshua A. Riback, Micayla A. Bowman, Adam M. Zmyslowski, Catherine R. Knoverek, John M. Jumper, James R. Hinshaw, Emily B. Kaye, Karl F. Freed, Patricia L. Clark, Tobin R. Sosnick, "Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water," Science 358 (6360), 238-241 (2017). DOI: 10.1126/science.aan5774 Cited 157 times

Joshua A. Riback, Christopher D. Katanski, Jamie L. Kear-Scott, Evgeny V. Pilipenko, Alexandra E. Rojek, Tobin R. Sosnick, D. Allan Drummond, "Stress-Triggered Phase Separation Is an Adaptive, Evolutionarily Tuned Response," Cell 168 (6), 1028-1040 (2017). DOI: 10.1016/j.cell.2017.02.027 Cited 603 times

Phillip S. Rushton, Anna T. Olek, Lee Makowski, John Badger, C. Nicklaus Steussy, Nicholas C. Carpita, Cynthia V. Stauffacher, "Rice Cellulose SynthaseA8 Plant-Conserved Region Is a Coiled-Coil at the Catalytic Core Entrance," Plant Physiol. 173 (1), 482-494 (2017). DOI: ​10.​1104/​pp.​16.​00739 Cited 24 times

N.J. Schnicker, "Catalytic diversity of cupin domain-containing enzymes," Ph.D., University of Iowa, 2017.

N.J. Schnicker, M. Razzaghi, S.G. Thakurta, S. Chakravarthy, M. Dey, "Bacillus anthracis Prolyl 4-Hydroxylase Interacts with and Modifies Elongation Factor Tu.," Biochem. J. 56 (43), 5771-5785 (2017). DOI: 10.1021/acs.biochem.7b00601 Cited 11 times

Nicholas J. Schnicker, Mortezalli Razzaghi, Sanjukta Guha Thakurta, Srinivas Chakravarthy, Mishtu Dey, "M. Bacillus anthracis Prolyl 4-Hydroxylase Interacts with and Modifies Elongation Factor Tu," Biochemistry-US 56 (43), 5771-5785 (2017). DOI: 10.1021/acs.biochem.7b00601 Cited 11 times

Ce Shi, Haifeng Tang, Jie Xiao, Fengchao Cui, Kecheng Yang, Ji Li, Qin Zhao, Qingrong Huang, Yunqi Li, "Small-Angle X-ray Scattering Study of Protein Complexes with Tea Polyphenols," J. Agric. Food Chem. 65 (3), 656-665 (2017). DOI: 10.1021/acs.jafc.6b04630 Cited 28 times

Jade Shi, R .Paul Nobrega, Christian Schwantes, Sagar V. Kathuria, Osman Bilsel, C. Robert Matthews, T.J. Lane, Vijay S. Pande, "Atomistic structural ensemble refinement reveals non-native structure stabilizes a sub-millisecond folding intermediate of CheY," Sci. Rep. 7, 44116-1-44116-13 (2017). DOI: 10.1038/srep44116 Cited 8 times

U.R. Shrestha, "Exploring The Physics Of Proteins At Molecular Level By Neutron And X-Ray Scattering," Ph.D., Wayne State University, 2017.

Nicholas Spellmon, Xiaonan Sun, Wen Xue, Joshua Holcomb, Srinivas Chakravarthy, Weifeng Shang, Brian Edwards, Nualpun Sirinupong, Chunying Li, Zhe Yang, "New open conformation of SMYD3 implicates conformational selection and allostery," AIMS Biophys. 4 (1), 1-18 (2017). DOI: 10.3934/biophy.2017.1.1 Cited 6 times

Dhiraj Srivastava, Mortezaali Razzaghi, Michael T. Henzl, Mishtu Dey, "Structural Investigation of a Dimeric Variant of Pyruvate Kinase Muscle Isoform 2," Biochemistry-US 56 (50), 6517-6520 (2017). DOI: 10.1021/acs.biochem.7b01013 Cited 9 times

Minfei Su, Yue Li, Shane Wyborny, David Neau, Srinivas Chakravarthy, Beth Levine, Christopher L. Colbert, Sangita C. Sinha, "BECN2 interacts with ATG14 through a metastable coiled-coil to mediate autophagy," Protein Sci. 26 (5), 972-984 (2017). DOI: 10.1002/pro.3140 Cited 8 times

Brendan Sullivan, Gregory Robison, Jenna Osborn, Martin Kay, Peter Thompson, Katherine Davis, Taisiya Zakharova, Olga Antipova, Yulia Pushkar, "On the nature of the Cu-rich aggregates in brain astrocytes," Redox Biol. 11, 231-239 (2017). DOI: 10.1016/j.redox.2016.12.007 Cited 31 times

Brendan Sullivan, Gregory Robison, Yulia Pushkar, John K. Young, Kebreten F. Manaye, "Copper accumulation in rodent brain astrocytes: A species difference," J. Trace Elem. Med. Bio 39, 6-13 (2017). DOI: 10.1016/j.jtemb.2016.06.011 Cited 20 times

Yingyuan Sun, Aaron P. Roznowski, Joshua M. Tokuda, Thomas Klose, Alexander Mauney, Lois Pollack, Bentley A. Fane, Michael G. Rossmann, "Structural changes of tailless bacteriophage [phi]X174 during penetration of bacterial cell walls," Proc. Natl. Acad. Sci. USA 114 (52), 13708-13713 (2017). DOI: 10.1073/pnas.1716614114 Cited 32 times

Magdalena Szymusiak, Joseph Kalkowski, Hanying Luo, Alexander Donovan, Pin Zhang, Chang Liu, Weifeng Shang, Thomas Irving, Margarita Herrera-Alonso, Ying Liu, "Core-shell Structure and Aggregation Number of Micelles Composed of Amphiphilic Block Copolymers and Amphiphilic Heterografted Polymer Brushes Determined by Small-Angle X-ray Scattering," ACS Macro Lett. 6 (9), 1005-1012 (2017). DOI: 10.1021/acsmacrolett.7b00490 Cited 44 times

Boris Tenchov, Rumiana Koynova, "Cubic phases in phosphatidylethanolamine dispersions: Formation, stability and phase transitions," Chem. Phys. Lipids 208, 65-74 (2017). DOI: 10.1016/j.chemphyslip.2017.09.005 Cited 11 times

J. Tokuda, "STRUCTURAL STUDIES OF NUCLEOSOMES WITH SMALL ANGLE X-RAY SCATTERING AND CONTRAST VARIATION," Ph.D., Cornell University, 2017.

Michele Tolbert, Christopher E. Morgan, Marvin Pollum, Carlos E. Crespo-Hernández, Mei-Ling Li, Gary Brewer, Blanton S. Tolbert, "HnRNP A1 Alters the Structure of a Conserved Enterovirus IRES Domain to Stimulate Viral Translation," J. Mol. Biol. 429 (19), 2841-2858 (2017). DOI: 10.1016/j.jmb.2017.06.007 Cited 52 times

Gianna Triller, Stephen W. Scally, Giulia Costa, Maria Pissarev, Cornelia Kreschel, Alexandre Bosch, Eric Marois, Brandon K. Sack, Rajagopal Murugan, Ahmed M. Salman, Chris J. Janse, Shahid M. Khan, Stefan H.I. Kappe, Ayola A. Adegnika, Benjamin Mordmüller, Elena A. Levashina, Jean-Philippe Julien, Hedda Wardemann, "Natural Parasite Exposure Induces Protective Human Anti-Malarial Antibodies," Immunity 47 (6), 1197-1209 (2017). DOI: 10.1016/j.immuni.2017.11.007 Cited 100 times

Lan Wang, Srinivas ChakravarthyS, Gregory L. Verdine, "Structural Basis for the Lesion-scanning Mechanism of the MutY DNA Glycosylase," J. Biol. Chem. 292 (12), 5007-5017 (2017). DOI: 10.1074/jbc.M116.757039 Cited 22 times

Zhen Xu, Lokesh Gakhar, Fletcher E. Bain, Maria Spies, Ernetso J. Fuentes, "The Tiam1 guanine nucleotide exchange factor is auto-inhibited by its pleckstrin homology coiled-coil extension domain," J. Biol. Chem. 292 (43), 17777-17793 (2017). DOI: 10.1074/jbc.M117.799114 Cited 15 times

Chen-Ching Yan, Katarzyna Kazmierczak, Jingsheng Liang, Rosemeire Kanashiro-Takeuchi, Thomas C. Irving, Aldrin V. Gomes, Yihua Wang, Thomas P. Burghardt, Danuta Szczesna-Cordary, "Hypercontractile mutant of ventricular myosin essential light chain leads to disruption of sarcomeric structure and function and results in restrictive cardiomyopathy in mice," Cardiovascular Res. 113 (10), 1124-1136 (2017). DOI: 10.1093/cvr/cvx060 Cited 25 times

Aliakbar Khalili Yazdi, Grant C. Vezina, Brian H. Shilton, "An alternate mode of oligomerization for E. coli SecA.," Sci. Rep. 7, 11747-1-11747- (2017). DOI: 10.1038/s41598-017-11648-5 Cited 4 times

C-C Yuan, "Structural and Functional Studies on Animals Models of Hypertrophic, Dilated and Restrictive Cardiomyopathy Caused by Myosin Light Chain Mutations," Ph.D., University of Miami, 2017.

Robert L. Anderson, Darshan V. Trivedi, Saswata S. Sarkar, Marcus Henze, Weikang Ma, Henry Gong, Christopher S. Rogers, Joshua M. Gorham, Fiona L. Wong, Makenna M. Morck, Jonathan G. Seidman, Kathleen M. Ruppel, Thomas C. Irving, Roger Cooke, Eric M. Green, James A. Spudich, "Deciphering the super relaxed state of human [beta]-cardiac myosin and the mode of action of mavacamten from myosin molecules to muscle fibers," Proc. Natl. Acad. Sci. USA 115 (35), E8143-E8152 (2018). DOI: 10.1073/pnas.1809540115 Cited 248 times

T. Beyett, "Structural Studies and Pharmacological Targeting of Protein Kinases in Obesity and Heart Disease," Ph.D., University of Michigan, 2018.

M.A. Bowman, "The Earliest Steps of Protein Folding: Conformational Biases within the Unfolded Ensemble and during Folding," Ph.D., University of Notre Dame, 2018.

Elizabeth E. Garland-Kuntz, Frank S. Vago, Monita Sieng, Michelle Van Camp, Srinivas Chakravarthy, Arryn Blaine, Clairissa Corpstein, Wen Jiang, Angeline M. Lyon, "Direct observation of conformational dynamics of the PH domain in phospholipases C[epsilon] and [beta]may contribute to subfamily-specific roles in regulation.," J. Biol. Chem. 293 (45), 17477-17490 (2018). DOI: 10.1074/jbc.RA118.003656 Cited 9 times

K. Glover, "Understanding Binding-Induced Disorder-to-Order And Conformational Transitions in Proteins that Regulate Autophagy," Ph.D., North Dakota State University, 2018.

David Gonzalez-Martinez, Jamie R. Johnston, Maicon Landim-Viera, Weikang Ma, Olga Antipova, Omar Awan, Thomas C. Irving, P. Bryant Chase, J. Renato Pinto, "Structural and functional impact of troponin C-mediated Ca[superscript 2+] sensitization on myofilament lattice spacing and cross-bridge mechanics in mouse cardiac muscle," J. Mol. Cell. Cardiol. 123, 26-37 (2018). DOI: 10.1016/j.yjmcc.2018.08.015 Cited 24 times

Joshua Holcomb, Maysaa Doughan, Nicholas Spellmon, Brianne Lewis, Emerson Perry, Yingxue Zhang, Lindsey Nico, Junmei Wan, Srinivas Chakravarthy, Weifeng Shang, Qing Miao, Timothy Stemmler, Zhe Yang, "SAXS analysis of a soluble cytosolic NgBR construct including extracellular and transmembrane domains.," PLoS One 13 (1), e0191371-1-e0191371-11 (2018). DOI: 10.1371/journal.pone.0191371 Cited 6 times

Wei Huang, Yi Peng, Janna Kiselar, Xuan Zhao, Aljawharah Albaqami, Daniel Mendez, Yinghua Chen, Srinivas Chakravarthy, Sayan Gupta, Corie Ralston, Hung-Ying Kao, Mark R. Chance, Sichun Yang, "Multidomain architecture of estrogen receptor reveals interfacial cross-talk between its DNA-binding and ligand-binding domains," Nat. Commun. 9 (3520), 3520-1-3520-10 (2018). DOI: 10.1038/s41467-018-06034-2

Barbara Joureau, Josine M. de Winter, Stefan Conijn, Sylvia J.P. Bogaards, Igor Kovacevic, Albert Kalganov, Malin Persson, Johan Lindqvist, Ger J.M. Stienen, Thomas C. Irving, Weikang Ma, Michaela Yuen, Nigel F. Clarke, Dilson E. Rassier, Edoardo Malfatti, Norma B. Romero, Alan H. Beggs, Coen A.C. Ottenheijm, "Dysfunctional sarcomere contractility contributes to muscle weakness in ACTA1-related nemaline myopathy (NEM3)," Ann. Neurol. 83 (2), 269-282 (2018). DOI: 10.1002/ana.25144 Cited 27 times

Ali Khounsary, Raymond Conley, Albert Macrander, Reno Waswil, Thomas Irving, Carlo U. Segre, "A dual-bandwidth multilayer monochromator system," Advances in X-Ray/EUV Optics and Components XIII, S. Goto, C. Morawe, A.M. Khounsary, eds., 10760, SPIE (2018), 107600J-1 - 107600J--8. DOI: 10.1117/12.2324824 Cited 1 times

Balazs Kiss, Eun-Jeong Lee, Weikang Ma, Frank W. Li, Paola Tonino, Srboljub M. Mijailovich, Thomas C. Irving, Henk L. Granzier, "Nebulin stiffens the thin filament and augments cross-bridge interaction in skeletal muscle," Proc. Natl. Acad. Sci. USA 115 (14), 10369-10374 (2018). DOI: 10.1073/pnas.1804726115 Cited 36 times

David A. Korasick, Ashley C. Campbell, Shelbi L. Christgen, Srinivas Chakravarthy, Tommi A. White, Donald F. Becker, John J. Tanner, "Redox Modulation of Oligomeric State in Proline Utilization A," Biophys. J. 114 (12), 2833-2843 (2018). DOI: 10.1016/j.bpj.2018.04.046. Cited 2 times

David A. Korasick, Tommi A. White, Srinivas Chakravarthy, John J. Tanner, "NAD[superscript +] promotes assembly of the active tetramer of aldehyde dehydrogenase 7A1," FEBS Lett. 592 (19), 3229-3238 (2018). DOI: 10.1002/1873-3468.13238 Cited 10 times

Jonathan R. LaRochelle, Michelle Fodor, Vidyasiri Vemulapalli, Morvarid Mohseni, Ping Wang, Travis Stams, Matthew J. LaMarche, Rajiv Chopra, Michael G. Acker, Stephen C. Blacklow, "Structural reorganization of SHP2 by oncogenic mutations and implications for oncoprotein resistance to allosteric inhibition," Nat. Commun. 9, 4508-1-4508-10 (2018). DOI: 10.1038/s41467-018-06823-9 Cited 108 times

Quinn Li, Lokesh Gakhar, M. Ashley Spies, "Determinants of human glucokinase activation and implications for small molecule allosteric control," BBA - General Subjects 1862 (9), 1902-1912 (2018). DOI: 10.1016/j.bbagen.2018.06.001 Cited 2 times

Justin l. Luebke, Daniel S. Eaton, Jospeh R. Sachleben, Sean Crosson, "Allosteric control of a bacterial stress response system by an anti-[sigma] factor," Mol. Microbiol. 107 (2), 164-179 (2018). DOI: 10.1111/mmi.13868 Cited 7 times

Weikang Ma, Henry Gong, Thomas Irving, "Myosin Head Configurations in Resting and Contracting Murine Skeletal Muscle," Int. J. Mol. Sci. 19 (9), 2643-1-2643-22 (2018). DOI: 10.3390/ijms19092643 Cited 45 times

Weikang Ma, Henry Gong, Eun-Jeong Lee, Henk Granzier, Thomas C. Irving, Balazs Kiss, "Thick-Filament Extensibility in Intact Skeletal Muscle," Biophys. J. 115 (8), 1580-1588 (2018). DOI: 10.1016/j.bpj.2018.08.038 Cited 42 times

R.S. Madhurapantula, J.P.R.O. Orgel, "X-Ray Diffraction Detects D-Periodic Location of Native Collagen Crosslinks In Situ and Those Resulting from Non- Enzymatic Glycation," Accelerator Physics - Radiation Safety and Applications, I. Ahmad, M. Malek, eds., InTechOpen, 2018, 149 - 169. DOI: 10.5772/intechopen.71022

Andrew W. Malaby, Sanchaita Das, Srinivas Chakravarthy, Thomas C. Irving, Osman Bilsel, David G. Lambright, "Structural Dynamics Control Allosteric Activation of Cytohesin Family Arf GTPase Exchange Factors.," Structure 26 (1), 106-117 (2018). DOI: 10.1016/j.str.2017.11.019 Cited 10 times

Suman Mazumder, Salik R. Dahal, Bharat P. Chaudhary, Smita Mohanty, "Structure and Function Studies of Asian Corn Borer Ostrinia furnacalis Pheromone Binding Protein2," Sci. Rep. 8, 17105-1-17105-12 (2018). DOI: 10.1038/s41598-018-35509-x Cited 9 times

C.E. Morgan, "Structural and Mechanistic Insights into HIV Regulated Splicing," Ph.D., Case Western Reserve, 2018.

Thandeka Moyo, June Ereño-Orbea, Rajesh Abraham Jacob, Clara E. Pavillet, Samuel Mundia Kariuki, Emily N. Tangie, Jean-Philippe Julien, Jeffrey R. Dorfman, "Molecular Basis of Unusually High Neutralization Resistance in Tier 3 HIV-1 Strain 253-11," J. Virol. 92 (14), e02261-1 -e02261-17 (2018). DOI: 10.1128/JVI.02261-17 Cited 12 times

Srinivasa R. Penumutchu, Liang-Yuan Chiu, Jennifer L. Meagher, Alexander L. Hansen, Jeanne A. Stuckey, Blanton S. Tolbert., "Differential Conformational Dynamics Encoded by the Linker between Quasi RNA Recognition Motifs of Heterogeneous Nuclear Ribonucleoprotein H," J. Am. Chem. Soc. 140 (37), 11661-11673 (2018). DOI: 10.1021/jacs.8b05366 Cited 9 times

J.D. Powers, "The myofilament basis of striated muscle function: Experimental and computational models," Ph.D., University of Washington, 2018.

Kyle T. Powers, Adrian H. Elcock, M. Todd Washington, "The C-terminal region of translesion synthesis DNA polymerase [eta] is partially unstructured and has high conformational flexibility," Nucleic Acids Res. 46 (4), 2107-2120 (2018). DOI: 10.1093/nar/gky031 Cited 15 times

K.T. Powers, E.D. Lavering, M.T. Washington, "Conformational Flexibility of Ubiquitin-Modified and SUMO-Modified PCNA Shown by Full-Ensemble Hybrid Methods," J. Mol. Biol. 430 (24), 5294-5303 (2018). DOI: 10.1016/j.jmb.2018.10.017 Cited 5 times

Elke Prade, Mukesh Mahajan, Sang-Choul Im, Katherine A. Gentry, G.M. Anantharamaiah, Lucy Waskell, Ayyalusamy Ramamoorthy, Meng Zhang, "A Minimal Functional Complex of Cytochrome P450 and FBD of Cytochrome P450 Reductase in Nanodiscs," Angew. Chem. Int. Ed. 9 (57), 8458-8462 (2018). DOI: 10.1002/anie.201802210 Cited 34 times

J.A. Riback, "Determinants of the Solvent Quality of Water for Disordered Proteins," Ph.D., University of Chicago, 2018.

Joshua A. Riback, Micayla A. Bowman, Adam Zmyslowski, Catherine R. Knoverek, John Jumper, Emily B. Kaye, Karl F. Freed, Patricia L. Clark, Tobin R. Sosnick., "Response to Comment on “Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water”," Science 361, eaar7949-1-eaar7949-2 (2018). DOI: 10.1126/science.aar7949 Cited 26 times

Joon Ho Roh, Duncan Kilburn, Reza Behrouzi, Wokyung Sung, R.M. Briber, Sarah A. Woodson, "Effects of Preferential Counterion Interactions on the Specificity of RNA Folding," J. Phys. Chem. Lett. 9 (19), 5726-5732 (2018). DOI: 10.1021/acs.jpclett.8b02086 Cited 2 times

Agnieszka Ruszkowska, Milosz Ruszkowski, Zbigniew Dauter, Jessica A. Brown, "Structural insights into the RNA methyltransferase domain of METTL16," Sci. Rep. 8, 5311-1-5311 (2018). DOI: 10.1038/s41598-018-23608-8 Cited 85 times

Bartosz Sekula, Zbigniew Dauter, "Crystal structure of thermospermine synthase from Medicago truncatula and substrate discriminatory features of plant aminopropyltransferases," Biochem. J. 475 (4), 787-802 (2018). DOI: 10.1042/BCJ20170900 Cited 13 times

Nidhi Sharma, Srinivas Chakravarthy, Matthew J. Longley, William C. Copeland, Aishwarya Prakash, "The C-terminal tail of the NEIL1 DNA glycosylase interacts with the human mitochondrial single-stranded DNA binding protein," DNA Repair 65 (65), 11-19 (2018). DOI: 10.1016/j.dnarep.2018.02.012 Cited 19 times

Jade Shi, "Bayesian Approaches to Building Models for Biological Systems," Ph.D., Standford University, 2018.

Nicholas Spellmon, "Alternative Strategies to Inhibit Lysine Methyltransferases and Deubiquitinases in Human Cancers," Ph.D., Wayne State University, 2018.

Y. Tian, "Programmable nanomaterials development via kinetically controlled self-assembly of computationally designed peptides," Ph.D., University of Delaware, 2018.

Yingkang Yang, Xiaoqi Wang, Guijie Chen, Wenhua Zhou, Xiaoxiong Zeng, Bing Hu, Yunqi Li, Qingrong Huang, "SAXS characterization of the interactions among digested food compounds and the anti-oxidant and anti-inflammatory activities of the formed nanocomplexes," Food Function 9 (6), 3408-3418 (2018). DOI: 10.1039/c8fo00563j Cited 3 times

Chen-Ching Yuan, Katarzyna Kazmierczak, Jingsheng Liang, Zhiqun Zhou, Sunil Yadav, Aldrin V. Gomes, Thomas C. Irving, Danuta Szczesna-Cordary, "Sarcomeric perturbations of myosin motors lead to dilated cardiomyopathy in genetically modified MYL2 mice.," Proc. Natl. Acad. Sci. USA 115 (10), E2338-E2347 (2018). DOI: 10.1073/pnas.1716925115 Cited 30 times

Zhening Zhang, Wenguang G. Liang, Lucas J. Bailey, Yong Zi Tan, Hui Wei, Andrew Wang, Mara Farcasanu, Virgil A. Woods, Lauren A. McCord, David Lee, Weifeng Shang, Rebecca Deprez-Poulain, Benoit Deprez, David R. Liu, Akiko Koide, Shohei Koide, Anthony A. Kossiakoff, Sheng Li, Bridget Carragher, Clinton S. Potter, Wei-Jen Tang, "Ensemble cryoEM elucidates the mechanism of insulin capture and degradation by human insulin degrading enzyme," eLIFE J. 7, e33572-1-e33572-28 (2018). DOI: 10.7554/eLife.33572 Cited 34 times

Bing-Rui Zhou, Jiansheng Jiang, Rodolfo Ghirlando, Davood Norouzi, K.N. Sathish Yadav, Hanqiao Feng, Rui Wang, Ping Zhang, Victor Zhurkin, Yawen Bai, "Revisit of Reconstituted 30-nm Nucleosome Arrays Reveals an Ensemble of Dynamic Structures," J. Mol. Biol. 430 (18B), 3093-3110 (2018). DOI: 10.1016/j.jmb.2018.06.020 Cited 32 times

Hao Zhou, "Characterization of proteins through a combination of wide-angle x-ray solution scattering and molecular dynamics simulations," Ph.D., Northeastern University, 2018.

Hao Zhou, Hugo Guterres, Carla Mattos, Lee Makowski, "Predicting X-ray solution scattering from flexible macromolecules," Protein Sci. 27 (12), 2023-2036 (2018). DOI: 10.1002/pro.3508 Cited 3 times

Sumit Bandekar, "Structure, Function, and Inhibition of the Oncogenic RhoGEF Trio," Ph.D., University of Michigan, 2019.

Tyler S. Beyett, Amy E. Fraley, Emily Labudde, Dhabaleswar Patra, Ryan C. Coleman, Akito Eguchi, Alisa Glukhova, Qiuyan Chen, Robert M. Williams, Walter J. Koch, David H. Sherman, John J.G. Tesmer, "Perturbation of the interactions of calmodulin with GRK5 using a natural product chemical probe," Proc. Natl. Acad. Sci. USA 116 (32), 15895-15900 (2019). DOI: 10.1073/pnas.1818547116 Cited 19 times

Jeetayu Biswas, Vivek L. Patel, Varun Bhaskar, Jeffrey A. Chao, Robert H. Singer, Carolina Eliscovich, "The structural basis for RNA selectivity by the IMP family of RNA-binding proteins," Nat. Commun. 10, 4440 (2019). DOI: 10.1038/s41467-019-12193-7 Cited 36 times

Samuel Bowerman, Joseph E. Curtis, Joseph Clayton, Emre H. Brookes, Jeff Wereszczynski, "BEES: Bayesian Ensemble Estimation from SAS," Biophys. Chem. 117 (3), 399-407 (2019). DOI: 10.1016/j.bpj.2019.06.024 Cited 8 times

Marci Caremani, Elixabetta Brunello, Marco Linari, Luca Fusi, Thomas C. Irving, David Gore, Gabriella Piazzesi, Malcolm Irving, Vincenzo Lombardi, Massimo Reconditi, "Low temperature traps myosin motors of mammalian muscle in a refractory state that prevents activation," J. Gen. Physiol. 151 (11), 1272-1286 (2019). DOI: 10.1085/jgp.201912424 Cited 45 times

L-Y. Chiu, "The Roles of RNA Structural Dynamics and Molecular Interaction in Viral Gene Expression," Ph.D., Case Western Reserve, 2019.

S.A. Cory, "Structure, Function, and Regulation of the Human Fe-S Cluster Biosynthetic Subcomplex," Ph.D., Texas A&M, 2019.

Andrew M. Crawford, Aniruddha Deb, James E. Penner-Hahn, "M-BLANK: a program for the fitting of X-ray fluorescence spectra," J. Synchrotron Rad. 26 (2), 497-503 (2019). DOI: 10.1107/S1600577519000651 Cited 4 times

Brandon M. D'Arcy, Jessa Blount, Aishwarya Prakash, "Biochemical and structural characterization of two variants of uncertain significance in the PMS2 gene," Hum. Mutat. 40 (4), 458-471 (2019). DOI: 10.1002/humu.23708 Cited 7 times

Sanchaita Das, Andrew W. Malaby, Agata Nawrotek, Wenhua Zhang, Mahel Zeghouf, Sarah Maslen, Mark Skehel, Srinivas Chakravarthy, Thomas C. Irving, Osman Bilsel, Jacqueline Cherfils, David G. Lambright, "Structural Organization and Dynamics of Homodimeric Cytohesin Family Arf GTPase Exchange Factors in Solution and on Membranes," Structure 27 (12), 1782-1797 (2019). DOI: 10.1016/j.str.2019.09.007 Cited 12 times

John V. Dzimianski, Florine E.M. Scholte, Isabelle L. Williams, Caroline Langley, Brendan T. Freitas, Jessica R. Spengler, Eric Bergeron, Scott D. Pegan, "Determining the molecular drivers of species-specific interferon-stimulated gene product 15 interactions with nairovirus ovarian tumor domain proteases," PLoS One 14 (12), e0226415 (2019). DOI: 10.1371/journal.pone.0226415 Cited 12 times

Xuan Fang, Jerzy Osipiuk, Srinivas Chakravarthy, Ming Yuan, William M. Menzer, Devin Nissen, Pingdong Liang, Daniel A. Raba, Karina Tuz, Andrew J. Howard, Andrzej Joachimiak, David D.L. Minh, Oscar Juarez, "Conserved residue His-257 of Vibrio cholerae flavin transferase ApbE plays a critical role in substrate binding and catalysis," J. Biol. Chem. 294 (37), 13800-13810 (2019). DOI: 10.1074/jbc.RA119.008261 Cited 9 times

K. Gentry, "Chemical and Structural Modulations of Cytochrome P450 Interactions with Redox Partners," Ph.D., University of Michigan, 2019.

M.S. Gildenberg, M.T. Washington, "Conformational flexibility of fork-remodeling helicase Rad5 shown by full-ensemble hybrid methods," PLoS One 14 (10), e0223875 (2019). DOI: 10.1371/journal.pone.0223875 Cited 6 times

Marta Grzechowiak, Milosz Ruszkowski, Joanna Sliwiak, Kamil Szpotkowski, Michal Sikorski, Mariusz Jaskolski, "Crystal structures of plant inorganic pyrophosphatase, an enzyme with a moonlighting autoproteolytic activity," Biochem. J. 476 (16), 2297-2319 (2019). DOI: 10.1042/BCJ20190427 Cited 11 times

Kevin T. Halloran, Yanming Wang, Karunesh Arora, Srinivas Chakravarthy, Thomas C. Irving, Osman Bilsel, Charles L. Brooks III, C. Robert Matthews, "Frustration and folding of a TIM barrel protein," Proc. Natl. Acad. Sci. USA 116 (33), 16378-16383 (2019). DOI: 10.1073/pnas.1900880116 Cited 17 times

Joseph Kalkowski, Chang Liu, Paola Leon-Plata, Magdalena Szymusiak, Pin Zhang, Thomas Irving, Weifeng Shang, Osman Bilsel, Ying Liu, "In Situ Measurements of Polymer Micellization Kinetics with Millisecond Temporal Resolution," Macromolecules 52 (9), 3151-3157 (2019). DOI: 10.1021/acs.macromol.8b02257 Cited 13 times

Katarzyna Kazmierczak, Jingsheng Liang, Chen-Ching Yuan, Sunil Yadav, Yoel H. Sitbon, Katherina Walz, Weikang Ma, Thomas C. Irving, Jenice X. Cheah, Aldrin V. Gomes, Danuta Szczesna-Cordary, "Slow-twitch skeletal muscle defects accompany cardiac dysfunction in transgenic mice with a mutation in the myosin regulatory light chain," FASEB J. 33 (3), 3151-3166 (2019). DOI: 10.1096/fj.201801402R Cited 10 times

L. Luo, "STRUCTURAL INSIGHTS INTO 7SK SNRNP COMPLEX AND ITS IMPLICATION FOR HIV-1 TRANSCRIPTIONAL CONTROL," Ph.D., Case Western Reserve, 2019.

Weikang Ma, Henry Gong, Balasz Kiss, Eun-Jeong Lee, Henk Granzier, Thomas Irving, "Response to: Thick Filament Length Changes in Muscle Have Both Elastic and Structural Components," Biophys. J. 116 (6), 985-986 (2019). DOI: 10.1016/j.bpj.2019.02.010 Cited 2 times

Weikang Ma, Thomas C. Irving, "X-ray Diffraction of Intact Murine Skeletal Muscle as a Tool for Studying the Structural Basis of Muscle Disease," J. Vis. Exper. 149, e59559-1-e59559-6 (2019). DOI: 10.3791/59559 Cited 10 times

Weikang Ma, Kyoung Hwan Lee, Shixin Yang, Thomas C. Irving, Roger Craig, "Lattice arrangement of myosin filaments correlates with fiber type in rat skeletal muscle," J. Gen. Physiol. 151 (12), 1404-1412 (2019). DOI: 10.1085/jgp.201912460 Cited 9 times

K. Manne, "Structural Studies of Some Proteins Responsible for Bacterial Pathogenesis," Ph.D., University of Alabama at Birmingham, 2019.

Srboljub M. Mijailovich, Boban Stojanovic, Djordje Nedic, Marina Svicevic, Michael A. Geeves, Thomas C. Irving, Henk L. Granzier, "Nebulin and titin modulate cross-bridge cycling and length-dependent calcium sensitivity.," J. Gen. Physiol. 151 (5), 680-704 (2019). DOI: 10.1085/jgp.201812165 Cited 30 times

S.M. Mijailovich., M. Prodanovic, T.C. Irving, "Estimation of Forces on Actin Filaments in Living Muscle from X-ray Diffraction Patterns and Mechanical Data," Int. J. Mol. Sci. 20 (23), 6044 (2019). DOI: 10.3390/ijms20236044 Cited 5 times

J.D. Murray, "The mechanisms and applications of a nucleotide-based heart failure therapy," Ph.D., University of Washington, 2019.

Joseph Orgel, Rama S. Madhurapantula, Ashley Eidsmore, Meng Wang, Pavel Dutov, Charles D. Modrich, Olga Antipova, Jason McDonald, Sikhanda Satapathy, "X-ray diffraction reveals blunt-force loading threshold for nanoscopic structural change in ex vivo neuronal tissues," J. Synchrotron Rad. 26 (1), 89-95 (2019). DOI: 10.1107/S1600577518015035 Cited 3 times

Ivan Peran, Alex S. Holehouse, Isaac S. Carrico, Rohit V. Pappu, Osman Bilsel, Daniel P. Raleigh, "Unfolded states under folding conditions accommodate sequence-specific conformational preferences with random coil-like dimensions," Proc. Natl. Acad. Sci. USA 116 (25), 12301-12310 (2019). DOI: 10.1073/pnas.1818206116 Cited 43 times

Joseph D. Powers, Chen-Ching Yuan, Kimberly J. McCabe, Jason D. Murray, Matthew Carter Childers, Galina V. Flint, Farid Moussavi-Harami, Saffie Mohran, Romi Castillo, Carla Zuzek, Weikang Ma, Valerie Daggett, Andrew D. McCulloch, Thomas C. Irving, Michael Regnier, "Cardiac myosin activation with 2-deoxy-ATP via increased electrostatic interactions with actin," Proc. Natl. Acad. Sci. USA 116 (23), 11502-11507 (2019). DOI: 10.1073/pnas.1905028116 Cited 27 times

Kyle T. Powers, Melissa S. Gildenberg, M. Todd Washington, "Modeling Conformationally Flexible Proteins With X-ray Scattering and Molecular Simulations," Comput. Struct. Biotec. 17, 570-578 (2019). DOI: 10.1016/j.csbj.2019.04.011 Cited 8 times

Joshua A. Riback, Micayla A. Bowman, Adam M. Zmyslowski, Kevin W. Plaxco, Patricia L. Clark, Tobin R. Sosnick, "Commonly used FRET fluorophores promote collapse of an otherwise disordered protein.," Proc. Natl. Acad. Sci. USA 116 (18), 8889-8894 (2019). DOI: 10.1073/pnas.1813038116 Cited 45 times

Bartosz Sekula, Zbigniew Dauter, "Spermidine Synthase (SPDS) Undergoes Concerted Structural Rearrangements Upon Ligand Binding - A Case Study of the Two SPDS Isoforms From Arabidopsis thaliana," Front. Plant. Sci. 10 (555), 555-1-555-12 (2019). DOI: 10.3389/fpls.2019.00555 Cited 5 times

Bartosz Sekula, Zbigniew Dauter, "Structural study of agmatine iminohydrolase from Medicago truncatula, the second enzyme of the agmatine route of putrescine biosynthesis in plants," Front. Plant. Sci. 10, 320-1-320-14 (2019). DOI: 10.3389/fpls.2019.00320 Cited 7 times

Yuval Shmueli, Yu-Chung Lin, Sungsik Lee, Mikhail Zhernenkov, Rina Tannenbaum, Gad Marom, Miriam H. Rafailovich, "In Situ Time-Resolved X-ray Scattering Study of Isotactic Polypropylene in Additive Manufacturing," ACS Appl. Mater. Interfaces 11 (40), 37112-37120 (2019). DOI: 10.1021/acsami.9b12908 Cited 42 times

M. Sieng, "Structural and Mechanistic Insights into Regulation of RGS17 and PLCepsilon," Masters, Purdue University, 2019.

Dhiraj Srinivastava, Nikolai Artemyev, "Large-scale conformational rearrangement of the [alpha]5-helix of G[alpha] subunits in complex with the guanine nucleotide exchange factor Ric8A," J. Biol. Chem. 294 (47), 17875-17882 (2019). DOI: 10.1074/jbc.AC119.011135 Cited 6 times

Dhiraj Srivastav, Lokesh Gakhar, Nikolai O. Artemyev, "Structural underpinnings of Ric8A function as a G-protein [alpha]-subunit chaperone and guanine-nucleotide exchange factor," Nat. Commun. 10, 3084-1-3084-14 (2019). DOI: 10.1038/s41467-019-11088-x Cited 21 times

Dhiraj Srivastava, Suparno Nandi, Mishtu Dey, "Mechanistic and Structural Insights into Cysteine-Mediated Inhibition of Pyruvate Kinase Muscle Isoform 2," Biochemistry-US 58 (35), 3669-3682 (2019). DOI: 10.1021/acs.biochem.9b00349 Cited 12 times

Y. Wang, "Advances in Coarse-grained Models for Protein Folding and Protein-protein Interactions," Ph.D., University of Michigan, 2019.

Zihao Wei, Qingrong Huang, "Modification of ovotransferrin by Maillard reaction: Consequences for structure, fibrillation and emulsifying property of fibrils," Food Hydrocolloid 97, 105186-1-105186-11 (2019). DOI: 10.1016/j.foodhyd.2019.105186 Cited 50 times

Zihao Wei, Hongwei Zhang, Qingrong Huang, "Curcumin-loaded Pickering emulsion stabilized by insoluble complexes involving ovotransferrin-gallic acid conjugates and carboxymethyldextran," Food Function 10 (8), 4911-4923 (2019). DOI: 10.1039/C9FO01162E Cited 61 times

Zihao Wei, Pei Zhu, Qingrong Huang, "Investigation of ovotransferrin conformation and its complexation with sugar beet pectin," Food Hydrocolloid 87, 448-458 (2019). DOI: 10.1016/j.foodhyd.2018.08.036 Cited 45 times

R.L. Woltz, "Hybrid Structural Biology Studies Reveal a Novel Mechanism by Which Influenza B NS1 Protein Suppresses Host Innate Immune Response," Ph.D., Rutgers, 2019.

Ravi P. Yadav, Kimberly Boyd, Liping Yu, Nikolai O. Artemyev, "Interaction of the TPR-domain of aryl hydrocarbon receptor-interacting protein-like 1 with the regulatory P[gamma] subunit of phosphodiesterase 6," J. Biol. Chem. 294 (43), 15795-15807 (2019). DOI: 10.1074/jbc.RA119.010666 Cited 7 times

Ravi P. Yadav, Kimberly Boyd, Liping Yu, Nikolai O. Artemyev, "Interaction of the tetratricopeptide repeat domain of aryl hydrocarbon receptor–interacting protein–like 1 with the regulatory P[gamma] subunit of phosphodiesterase 6," J. Biol. Chem. 294 (43), 15795-15807 (2019). DOI: 10.1074/jbc.RA119.010666 Cited 7 times

Zhihui Yao, Brian P. Cary, Craig A. Bingman, Chenxuan Wang, Dale F. Kreitler, Kenneth A. Satyshur, Katrina T. Forest, Samuel H. Gellman, "Use of a Stereochemical Strategy To Probe the Mechanism of Phenol-Soluble Modulin [alpha]3 Toxicity," J. Am. Chem. Soc. 141 (19), 7660-7664 (2019). DOI: 10.1021/jacs.9b00349 Cited 28 times

B. Zeng, "A STRUCTURAL AND BIOCHEMICAL STUDY ON RIC-8A, AN INTRACELLULAR GUANINE NUCLEOTIDE EXCHANGE FACTOR AND FOLDING CHAPERONE FOR THE INHIBITORY G-PROTEIN ALPHA SUBUNIT-1," Ph.D., University of Montana, 2019.

Maria C. Bewley, Lovely Gautam, Mashanipalya G. Jagadeeshaprasad, D. Channe Gowda, John M. Flanagan, "Molecular architecture and domain arrangement of the placental malaria protein VAR2CSA suggests a model for carbohydrate binding," J. Biol. Chem. 295 (52), 18589-18603 (2020). DOI: 10.1074/jbc.RA120.014676 Cited 13 times

Micayla A. Bowman, Joshua A. Riback, Anabel Rodriguez, Hongyu Guo, Jun Li, Tobin R. Sosnick, Patricia L. Clark, "Properties of protein unfolded states suggest broad selection for expanded conformational ensembles," Proc. Natl. Acad. Sci. USA 117 (38), 23356-23364 (2020). DOI: 10.1073/pnas.2003773117 Cited 33 times

R.A. Carmona, G. Agam, T. Irving, "Background subtraction in diffraction x-ray images using deep CNN," Proc. Computational Imaging XVIII, C.A Bouman, G.T. Buzzard, R.L. Stevenson, 2020, Society for Imaging Science and Technology, (2020), online.

M.S. Gildenberg, "The structure and function of fork remodeling helicase RAD5," Ph.D., University of Iowa, 2020.

Henry Gong, Weikang Ma, Shaoshuai Chen, Geng Wang, Ramzi Khairallah, Thomas Irving, "Localization of the Elastic Proteins in the Flight Muscle of Manduca sexta," Int. J. Mol. Sci. 21 (15), 5504 (2020). DOI: 10.3390/ijms21155504 Cited 4 times

A.R. Gutgsell, "NOVEL STRATEGIES TO ENHANCE LPL ACTIVITY IN VIVO," Ph.D., University of North Carolina, 2020.

Jaime L. Jensen, Beau D. Jernberg, Sangita C. Sinha, Christopher L. Colbert, "Structural basis of cell-surface signaling by a conserved sigma regulator in Gram-negative bacteria," J. Biol. Chem. 295 (17), 5795-5806 (2020). DOI: 10.1074/jbc.RA119.010697 Cited 6 times

J.R. Johnston, "Biophysical Defects Link Rare TNNC1 Variants to Cardiomyopathy," Ph.D., Florida State University, 2020.

Md. R. Karim, "Discovery and Characterization of Small Molecule Inhibitors of Bromodomains," Ph.D., University of South Florida, 2020.

David A. Korasick, Pramod K. Kandoth, John J. Tanner, Melissa G. Mitchum, Lesa J. Beamer, "Impaired folate binding of serine hydroxymethyltransferase 8 from soybean underlies resistance to the soybean cyst nematode," J. Biol. Chem. 295 (11), 3708-3718 (2020). DOI: 10.1074/jbc.RA119.012256 Cited 18 times

Katherine Leon, Rebecca L. Cunningham, Joshua A. Riback, Ezra Feldman, Jingxian Li, Tobin R. Sosnick, Minglei Zhao, Kelly R. Monk, Demet Araç, "Structural basis for adhesion G protein-coupled receptor Gpr126 function," Nat. Commun. 11, 194-1-194-14 (2020). DOI: 10.1038/s41467-019-14040-1 Cited 42 times

J. Li, Q. Huang, "Structural Investigation of Oat Protein Isolate in Aqueous Medium by using Synchrotron Small-angle X-ray Scattering," J. Med. Bio. Appl. Sci. 8 (11), 535-547 (2020). DOI: 10.1101/2020.11.14.363911

Johan Lindqvist, Weikang Ma, Frank Li, Yaeren Hernandez, Justin Kolb, Balazs Kiss, Paola Tonino, Robert van der Pijl, Esmat Karimi, Henry Gong, Josh Strom, Zaynab Hourani, John E. Smith III, Coen Ottenheijm, Thomas Irving, Henk Granzier, "Triggering typical nemaline myopathy with compound heterozygous nebulin mutations reveals myofilament structural changes as pathomechanism," Nat. Commun. 11, 2699 (2020). DOI: 10.1038/s41467-020-16526-9 Cited 12 times

Chang Liu, "Controlled Release of Therapeutic Agents from Polymeric Particles," Ph.D., University of Illinois Chicago, 2020.

Weikang Ma, Matthew Childers, Jason Murray, Faird Moussavi-Harami, Henry Gong, Robert Weiss, Valerie Daggett, Thomas Irving, Michael Regnier, "Myosin dynamics during relaxation in mouse soleus muscle and modulation by 2'-deoxy-ATP," J. Physiol-London 598 (22), 5182 (2020). DOI: 10.1113/JP280402 Cited 24 times

Rama S. Madhurapantula, Gabriel Krell, Berenice Morgin, Rajarshi Roy, Kevin Lister, Joseph P.R.O. Orgel, "Advanced Methodology and Preliminary Measurements of Molecular and Mechanical Properties of Heart Valves Under Dynamic Strain," Int. J. Mol. Sci. 21 (3), 763 (2020). DOI: 10.3390/ijms21030763 Cited 8 times

S.A Malingen, "The kinematics and mechanics of muscle's myofilament lattice," Ph.D., University of Washington, 2020.

S.A. Malingen, "The kinematics and mechanics of muscle's myfilament lattice," Ph.D., University of Washington, 2020.

Sage A. Malingen, Anthony M. Asencio, Julie A. Cass, Weikang Ma, Thomas C. Irving, Thomas L. Daniel, "In vivo X-ray diffraction and simultaneous EMG reveal the time course of myofilament lattice dilation and filament stretch," J. Exp. Biol. 223, jeb224188 (2020). DOI: 10.1242/jeb.224188 Cited 7 times

Jordon M. Manci, Cristian Suarez, Wenguang G. Liang, David R. Kovar, Wei-jen Tang, "Pseudomonas aeruginosa exoenzyme Y directly bundles actin filaments," J. Biol. Chem. 295 (11), 3506-3517 (2020). DOI: 10.1074/jbc.RA119.012320 Cited 9 times

Kartik Manne, Debasish Chattopadhyay, Vaibhav Agarwal, Anna M. Blom, Baldeep Khare, Srinivas Chakravarthy, Chungyu Chang, Hung Ton-That, Sthanam V.L. Narayana, "Novel structure of the N-terminal helical domain of BibA, a group B streptococcus immunogenic bacterial adhesin," Acta Crystallogr. D 76 (8), 759-770 (2020). DOI: 10.1107/S2059798320008116 Cited 7 times

Erik W. Martin, Alex S. Holehouse, Ivan Peran, Mina Farag, J. Jeremias Incicco, Anne Bremer, Christy R. Grace, Andrea Soranno, Rohit V. Pappu, Tanja Mittag, "Valence and patterning of aromatic residues determine the phase behavior of prion-like domains," Science 367, 694-699 (2020). DOI: 10.1126/science.aaw8653 Cited 581 times

Levi J. McClelland, Kaiming Zhang, Tung-Chung Mou, Jake Johnston, Cindee Yates-Hansen, Shanshan Li, Celestine J. Thomas, Tzanko I. Doukov, Sarah Triest, Alexandre Wohlkonig, Gregory G. Tall, Jan Steyaert, Wah Chiu, Stephen R. Sprang, "Structure of the G protein chaperone and guanine nucleotide exchange factor Ric-8A bound to G[alpha]i1," Nat. Commun. 11, 1077 (2020). DOI: 10.1038/s41467-020-14943-4 Cited 15 times

C.P. McMullin, "Biochemical Investigation of Ceramide Transfer Protein Regulation," Ph.D., University of Missouri - Kansas City, 2020.

R.C. Monsen, "Structural characterization and seletive drug targeting of highter-order DNA G-quadraplex systems," Ph.D., University of Louisville, 2020.

Robert C. Monsen, Lynn DeLeeuw, Richard D. Gray, T. Michael Sabo, Srinivas Chakravarthy, JonathanB. Chalres, John O. Trent, William L. Dean, "The hTERT core promoter forms three parallel G-quadruplexes," Nucleic Acids Res. 48 (10), 5720-5734 (2020). DOI: 10.1093/nar/gkaa107 Cited 59 times

N. Nagaratnam, "Structural and Biophysical Studies of Pathological Determinants in Cancer and Infectious Diseases," Ph.D., Arizona State University, 2020.

S. Nandi, "Allosteric regulation of pyruvate kinase muscle isoform 2," Ph.D., University of Iowa, 2020.

Linda J. Olson, Sandeep K. Misra, Mayumi Ishihara, Kevin P. Battaile, Oliver C. Grant, Amika Sood, Robert J. Woods, Jung-Ja P. Kim, Michael Tiemeyer, Gang Ren, Joshua S. Sharp, Nancy M. Dahms, "Allosteric regulation of lysosomal enzyme recognition by the cation-independent mannose 6-phosphate receptor," Commun. Biol. 3, 498 (2020). DOI: 10.1038/s42003-020-01211-w Cited 20 times

Raúl Padrón, Weikang Ma, Sebastian Duno-Miranda, Natalia Koubassova, Kyoung Hwan Lee, Antonio Pinto, Lorenzo Alamo, Pura Bolaños, Andrey Tsaturyan, Thomas Irving, Roger Craig, "The myosin interacting-heads motif present in live tarantula muscle explains tetanic and posttetanic phosphorylation mechanisms," Proc. Natl. Acad. Sci. USA 117 (22), 11865-11874 (2020). DOI: 10.1073/pnas.1921312117 Cited 32 times

Joseph S. Pak, Zachary J. DeLoughery, Jing Wang, Nischal Acharya, Yeonwoo Park, Alexander Jaworski, Engin Özkan, "NELL2-Robo3 complex structure reveals mechanisms of receptor activation for axon guidance," Nat. Commun. 11, 1489-1-1489-14 (2020). DOI: 10.1038/s41467-020-15211-1 Cited 28 times

Sandeep K. Ravala, Jesse B. Hopkins, Caoline B. Plescia, Samantha R. Allgood, Madison A. Kane, Jennifer N. Cash, Robert V. Stahelin, John J.G. Tesmer, "The first DEP domain of the RhoGEF P-Rex1 autoinhibits activity and contributes to membrane binding," J. Biol. Chem. 295 (36), 12635-12647 (2020). DOI: 10.1074/jbc.RA120.014534 Cited 11 times

M. Razzaghi, "Structural and biochemical insights into two key metabolic pathway enzymes," Ph.D., University of Iowa, 2020. DOI: 10.17077/etd.005318

B.M. Ripley, "RAD6-18 interactions with translesion synthesis polymerases, Pol H and Rev1," Ph.D., University of Iowa, 2020.

Ngango Y. Rugema, Elisabeth E. Garland-Kuntz, Monita Sieng, Kaushik Muralidharan, Michelle M. Van Camp, Hannah O’Neill, William Mbongo, Arielle F. Selvia, Andrea T. Marti, Amanda Everly, Emmanda McKenzie, Angeline M. Lyon, "Structure of phospholipase C[epsilon] reveals an integrated RA1 domain and previously unidentified regulatory elements," Commun. Biol. 3, 445 (2020). DOI: 10.1038/s42003-020-01178-8 Cited 8 times

P.S. Rushton, "STRUCTURE OF THE PLANT-CONSERVED REGION OF CELLULOSE SYNTHASE AND ITS INTERACTIONS WITH THE CATALYTIC CORE," Ph.D., Purdue University, 2020.

Josue San Emeterio, Lois Pollack, "Visualizing a viral genome with contrast variation small angle x-ray scattering," J. Biol. Chem. 295 (47), 15923-15932 (2020). DOI: 10.1074/jbc.RA120.013961 Cited 7 times

Bartosz Sekula, "The Neighboring Subunit Is Engaged to Stabilize the Substrate in the Active Site of Plant Arginases," Front. Plant. Sci. 11, 987 (2020). DOI: 10.3389/fpls.2020.00987 Cited 11 times

Bartosz Sekula, Milosz Ruszkowski, Zbigniew Dauter, "S-adenosylmethionine synthases in plants: Structural characterization of type I and II isoenzymes from Arabidopsis thaliana and Medicago truncatula," Int. J. Biol. Macromol. 151, 554-565 (2020). DOI: 10.1016/j.ijbiomac.2020.02.100 Cited 25 times

Pankaj Sharma, Elena Maklashina, Gary Cecchini, T.M. Iverson, "The roles of SDHAF2 and dicarboxylate in covalent flavinylation of SDHA, the human complex II flavoprotein," Proc. Natl. Acad. Sci. USA 117 (38), 23548-23556 (2020). DOI: 10.1073/pnas.2007391117 Cited 31 times

Yuval Shmueli, Yu-Chung Lin, Xianghao Zuo, Yichen GUo, Sungsik Lee, Guillaume Freychet, Mikhail Zhernenkov, Taejin Kim, Rina Tannenbaum, Gad Marom, Dilip Gersappe, Miriam H. Rafailovich, "In-situ X-ray scattering study of isotactic polypropylene/graphene nanocomposites under shear during fused deposition modeling 3D printing," Compos. Sci. Tech. 196, 108227 (2020). DOI: 10.1016/j.compscitech.2020.108227 Cited 42 times

Monita Sieng, Arielle F. Selvia, Elisabeth E. Garland-Kuntz, Jesse B. Hopkins, Isaac J. Fisher, Andrea T. Marti, Angeline M. Lyon, "Functional and structural characterization of allosteric activation of phospholipase C[epsilon] by Rap1A," J. Biol. Chem. 295 (49), 16562-16571 (2020). DOI: 10.1074/jbc.RA120.015685 Cited 3 times

Kyle P. Smith, Pamela J. Focia, Srinivas Chakravarthy, Eric C. Landahl, Julian L. Klosowiak, Sarah E. Rice, Douglas M. Freymann, "Insight into human Miro1/2 domain organization based on the structure of its N-terminal GTPase," J. Struct. Biol. 212 (3), 107656 (2020). DOI: 10.1016/j.jsb.2020.107656 Cited 16 times

H. Taylor, "Structural Study of the Complex Between DNA Polymerase Iota and Ub-PCNA," Masters, University of Western Ontario, 2020.

N. Tiwari, "Regulatory mechanisms of the Staphylococcus aureus SrrAB two-component system," Ph.D., University of Iowa, 2020.

Nitija Tiwari, Marisa López-Redondo, Laura Miguel-Romero, Katarina Kulhankova, Michael P. Cahill, Phuong M. Tran, Kyle J. Kinney, Samuel H. Kilgore, Hassan Al-Tameemi, Christine A. Herfst, Stephen W. Tuffs, John R. Kirby, Jeffery M. Boyd, John K. McCormick, Wilmara Salgado-Pabón, Alberto Marina, Patrick M. Schlievert, Ernesto J. Fuentes, "The SrrAB two-component system regulates Staphylococcus aureus pathogenicity through redox sensitive cysteines," Proc. Natl. Acad. Sci. USA 117 (20), 10989-10999 (2020). DOI: 10.1073/pnas.1921307117 Cited 57 times

T.C. Tune, W. Ma, T. Irving, S. Sponberg, "Nanometer-scale Structure Differences in the Myofilament Lattice Spacing of Two Cockroach Leg Muscles Correspond to Their Different Functions," J. Exp. Biol. 223, jeb212829 (2020). DOI: 10.1242/jeb.212829 Cited 8 times

YiFei Xu, Fabio Nudelman, E. Deniz Eren, Maarten J.M. Wirix, Bram Cantaert, Wouter H. Nijhuis, Daniel Hermida-Merino, Giuseppe Portale, Paul H.H. Bomans, Christian Ottmann, Heiner Friedrich, Wim Bras, Anat Akiva, Joseph P.R.O. Orgel, Fiona C. Meldrum, Nico Sommerdijk, "Intermolecular channels direct crystal orientation in mineralized collagen," Nat. Commun. 11, 5068 (2020). DOI: 10.1038/s41467-020-18846-2 Cited 110 times

Peiguo Yang, Cécile Mathieu, Regina-Maria Kolaitis, Peipei Zhang, James Messing, Ugur Yurtsever, Zemin Yang, Jinjun Wu, Yuxin Li, Qingfei Pan, Jiyang Yu, Erik W. Martin, Tanja Mittag, Hong Joo Kim, J. Paul Taylor, "G3BP1 Is a Tunable Switch that Triggers Phase Separation to Assemble Stress Granules," Cell 181 (2), 325-345 (2020). DOI: 10.1016/j.cell.2020.03.046 Cited 685 times

Jie Zhu, Rama S. Madhurapantula, Aruna Kalyanasundaram, Tanya Sabharwal, Olga Antipova, Sandra W. Bishnoi, Joseph P.R.O. Orgel, "Ultrastructural Location and Interactions of the Immunoglobulin Receptor Binding Sequence within Fibrillar Type I Collagen," Int. J. Mol. Sci. 21 (11), 4166 (2020). DOI: 10.3390/ijms21114166 Cited 12 times

Josine M. de Winter, Joery P. Molenaar, Michaela Yuen, Robbert van der Pijl, Shengyi Shen, Stefan Conijn, Martijn van de Locht, Menne Willigenburg, Sylvia J. Bogaards, Esmee S.B. van Kleef, Saskia Lassche, Malin Persson, Dilson E. Rassier, Tamar E. Sztal, Avnika A. Ruparelia, Viola Oorschot, Georg Ramm, Thomas E. Hall, Zherui Xiong, Christopher N. Johnson, Frank Li, Balazs Kiss, Noelia Lozano-Vidal, Reinier A. Boon, Manuela Marabita, Leonardo Nogara, Bert Blaauw, Richard J. Rodenburg, Benno Kϋsters, Jonne Doorduin, Alan H. Beggs, Henk Granzier, Ken Campbell, Weikang Ma, Thomas Irving, Edoardo Malfatti, Norma B. Romero, Robert J. Bryson-Richardson, Baziel G. van Engelen, Nicol C. Voermans, Coen A. Ottenheijm, "KBTBD13 is an actin-binding protein that modulates muscle kinetics," J. Clin. Invest. 130 (2), 754-767 (2020). DOI: 10.1172/JCI124000 Cited 32 times

R. Akella, JM Humphreys, K. Sekulski, H. He, M. Durbacz, S. Chakravarthy, J. Liwocha, ZJ Mohammed, CA Brautigam, EJ Goldsmith, "Osmosensing by WNK Kinases," Mol. Biol. Cell 32 (18), 1611-1791 (2021). DOI: 10.1091/mbc.E20-01-0089 Cited 17 times

O.T. Al-Danoon, "Overexpression, characterization, and structure-function studies of pheromone binding proteins from European corn borer, Ostrinia nubilalis," Ph.D., Oklahoma State University, 2021.

Marco Caremani, Luca Fusi, Marco Linari, Massimo Reconditi, Gabriella Piazzesi, Thomas C. Irving, Theyencheri Narayanan, Malcolm Irving, Vincenzo Lombardi, Elisabetta Brunello, "Dependence of thick filament structure in relaxed mammalian skeletal muscle on temperature and interfilament spacing," J. Gen. Physiol. 153 (3), e202012713 (2021). DOI: 10.1085/jgp.202012713 Cited 25 times

Julie A. Cass, C. David Williams, Thomas C. Irving, Eric Lauga, Sage Malingen, Thomas L. Daniel, Simon N. Sponberg, "A mechanism for sarcomere breathing: volume change and advective flow within the myofilament lattice," Biophys. J. 120 (18), 4079-4090 (2021). DOI: 10.1016/j.bpj.2021.08.006 Cited 6 times

Qiuyan Chen, Ya Zhuo, Pankaj Sharma, Ivett Perez, Derek J. Francis, Srinivas Chakravarthy, Sergey A. Vishnivetskiy, Sandra Berndt, Susan M. Hanson, Xuanzhi Zhan, Evan K Brooks, Christian Altenbach, Wayne L. Hubbell, Candice S. Klug, T.M. Iverson, Vsevolod V. Gurevich, "An Eight Amino Acid Segment Controls Oligomerization and Preferred Conformation of the two Non-visual Arrestins," J. Mol. Biol. 433 (4), 166790 (2021). DOI: 10.1016/j.jmb.2020.166790 Cited 18 times

J.A. Clayton, "Computational Study on the Heme Scavenging Ability of Staphylococcus aureus IsdH Receptor: Utilizing Molecular Dynamics to Understand an Unknown Mechanism," Ph.D., Illinois Institute of Technology, 2021.

Sampath K. Gollapudi, Weikang Ma, Srinivas Chakravarthy, Ariana C. Combs, Na Sa, Stephen Langer, Thomas C. Irving, Suman Nag, "Two Classes of Myosin Inhibitors, Para-nitroblebbistatin and Mavacamten, Stabilize [beta]-Cardiac Myosin in Different Structural and Functional States," J. Mol. Biol. 433 (23), 167295 (2021). DOI: 10.1016/j.jmb.2021.167295 Cited 23 times

T.J. Gremminger, "RNA structural studies : implications in HIV-1 replication and the origins of life," Ph.D., University of Missouri, 2021.

Kathryn H. Gunn, Aspen R. Gutgsell, Yongmei Xu, Caitlin V. Johnson, Jian Liu, Saskia B. Neher, "Comparison of angiopoietin-like protein 3 and 4 reveals structural and mechanistic similarities," J. Biol. Chem. 296, 100312 (2021). DOI: 10.1016/j.jbc.2021.100312 Cited 9 times

Yike Jiang, Weiping Jin, Jessica Li, Qingrong Huang, "Associations between caseinophosphopeptides and theaflavin-3,3'-digallate and their impact on cellular antioxidant activity," Food Function 12 (16), 7390-7401 (2021). DOI: 10.1039/d1fo01413g Cited 8 times

Venus Joumaa, Ian C. Smith, Atsuki Fukutani, Timothy R. Leonard, Weikang Ma, Srboljub M. Mijailovich, Thomas C. Irving, Walter Herzog, "Effect of Active Lengthening and Shortening on Small-Angle X-ray Reflections in Skinned Skeletal Muscle Fibres," Int. J. Mol. Sci. 22 (16), 8526 (2021). DOI: 10.3390/ijms22168526 Cited 12 times

Bernhard C. Lechtenberg, Marina P. Gehring, Taylor P. Light, Christopher R. Horne, Mike W. Matsumoto, Kalina Hristova, Elena B. Pasquale, "Regulation of the EphA2 receptor intracellular region by phosphomimetic negative charges in the kinase-SAM linker," Nat. Commun. 12, 7047 (2021). DOI: 10.1038/s41467-021-27343-z Cited 14 times

Young-Tae Lee, Alex Ayoub, Sang-Ho Park, Liang Sha, Jing Xu, Fengbiao Mao, Wei Zheng, Yang Zhang, Uhn-Soo Cho, Yali Dou, "Mechanism for DPY30 and ASH2L intrinsically disordered regions to modulate the MLL/SET1 activity on chromatin," Nat. Commun. 12, 2953 (2021). DOI: 10.1038/s41467-021-23268-9 Cited 22 times

Jeffrey D. Levengood, Jjake Peterson, Blanton S. Tolbert, Julien Roche, "Thermodynamic stability of hnRNP A1 low complexity domain revealed by high-pressure NMR," Proteins 89 (7), 781-791 (2021). DOI: 10.1002/prot.26058 Cited 3 times

Wenguang G. Liang, Jordan M. Mancl, Minglei Zhao, Wei-Jen Tang, "Structural analysis of Mycobacterium tuberculosis M13 metalloprotease Zmp1 open states," Structure 29 (7), 709-720 (2021). DOI: 10.1016/j.str.2020.12.002 Cited 6 times

Jiayin Liu, Hossein Ghanizadeh, Xinmao Li, Zhengyuan Han, Youwen Qiu, Yao Zhang, Xiuling Chen, Aoxue Wang, "A Study of the Interaction, Morphology, and Structure in Trypsin-Epigallocatechin-3-Gallate Complexes," Molecules 26 (15), 4567 (2021). DOI: 10.3390/molecules26154567 Cited 9 times

S.-Q. Liu, A. Grantham, C. Landry, B. Granda, R. Chopra, S. Chakravarthy, S. Deutsch, M. Vogel, K. Russo, K. Seiss, W.R. Tschantz, T. Rejtar, D.A. Ruddy, Ti. Hu, K. Aardalen, J.P. Wagner, G. Dranoff, J.A. D'Alessio, "A CRISPR Screen Reveals Resistance Mechanisms to CD3-Bispecific Antibody Therapy," Cancer Immunol. Res. 9 (1), 34-39 (2021). DOI: 10.1158/2326-6066.CIR-20-0080 Cited 2 times

Le Luo, Liang-Yuan Chiu, Andrew Sugarman, Paromita Gupta, Silvi Rouskin, Blanton S. Tolbert, "HnRNP A1/A2 Proteins Assemble onto 7SK snRNA via Context Dependent Interactions," J. Mol. Biol. 433 (9), 166885 (2021). DOI: 10.1016/j.jmb.2021.166885 Cited 16 times

Thomas L . Lynch IV, Mohit Kumar, James W. McNamara, Diederik W.D. Kuster, Mayandi Sivaguru, Rohit R. Singh, Michael J. Previs, Kyoung Hwan Lee, Gina Kuffel, Michael J. Zilliox, Brian Leei Lin, Weikang Ma, Aaron M. Gibson, Burns C. Blaxall, Michelle L. Nieman, John N. Lorenz, Dana M. Leichter, Owen P. Leary, Paul M.L. Janssen, Pieter P. de Tombe, Richard J. Gilbert, Roger Craig, Thomas Irving, David M. Warshaw, Sakthivel Sadayappan, "Amino terminus of cardiac myosin binding protein-C regulates cardiac contractility," J. Mol. Cell. Cardiol. 156, 33-44 (2021). DOI: 10.1016/j.yjmcc.2021.03.009 Cited 17 times

Weikang Ma, Sebastian Duno-Miranda, Thomas C. Irving, Roger Craig, Raul Padron, "Relaxed tarantula skeletal muscle has two ATP energy-saving mechanisms," J. Gen. Physiol. 153 (3), e202012780 (2021). DOI: 10.1085/jgp.202012780 Cited 12 times

Weikang Ma, Marcus Henze, Robert L. Anderson, Henry Gong, Fiona L. Wong, Carlos L. DelRio, Thomas Irving, "The Super-Relaxed State and Length Dependent Activation in Porcine Myocardium," Circ. Res. 129 (6), 617-630 (2021). DOI: 10.1161/CIRCRESAHA.120.318647 Cited 46 times

Erik W. Martin, Tyler S. Harmon, Jesse B. Hopkins, Srinivas Chakravarthy, J. Jeremias Incicco, Peter Schuck, Andrea Soranno, Tanja Mittag, "A multi-step nucleation process determines the kinetics of prion-like domain phase separation," Nat. Commun. 12, 4513 (2021). DOI: 10.1038/s41467-021-24727-z Cited 75 times

Erik W. Martin, Jesse B. Hopkins, Tanja Mittag, "Small-angle X-ray scattering experiments of monodisperse intrinsically disordered protein samples close to the solubility limit," Methods Enzymol. 646, 185-222 (2021). DOI: 10.1016/bs.mie.2020.07.002 Cited 17 times

Erik W. Martin, F. Emil Thomasen, Nicole M. Milkovic, Matthew J. Cuneo, Christy R. Grace, Amanda Nourse, Kresten Lindorff-Larsen, Tanja Mittag, "Interplay of folded domains and the disordered low-complexity domain in mediating hnRNPA1 phase separation," Nucleic Acids Res. 49 (5), 2931-2945 (2021). DOI: 10.1093/nar/gkab063 Cited 78 times

Alexander S. Minasyan, Srinivas Chakravarthy, Suchitra Vardelly, Mark Joseph, Evgueni E. Nesterov, Irina V. Nesterova, "Rational design of guiding elements to control folding topology in i-motifs with multiple quadruplexes," Nanoscale 13 (19), 8875-8883 (2021). DOI: 10.1039/d1nr00611h Cited 3 times

D. Mishra, "Investigating the Role of Titin in Skeletal Muscles from mdm Mice with a Deletion in N2a Titin," Ph.D., Northern Arizona University, 2021.

Robert C. Monsen, Srinivas Chakravarthy, William L. Dean, Jonathan B. Chaires, John O. Trent, "The solution structures of higher-order human telomere G-quadruplex multimers," Nucleic Acids Res. 49 (3), 1749-1768 (2021). DOI: 10.1093/nar/gkaa1285 Cited 32 times

Michael W. Moran, Elizabeth P. Ramirez, James D. Zook, Alicia M. Saarinen, Bobby Baravati, Matthew R. Goode, Vasiliki Laloudakis, Emily K. Kaschner, Tien L. Olson, Felicia M. Craciunescu, Debra T. Hansen, Jun Liu, Petra Fromme, "Biophysical characterization and a roadmap towards the NMR solution structure of G0S2, a key enzyme in non-alcoholic fatty liver disease," PLoS One 16 (7), e0249164 (2021). DOI: 10.1371/journal.pone.0249164 Cited 2 times

S. Mukhopadhyay, "Investigating the Role of BECN1 Conformationally Flexible Regions and Invariant Cys-X-X-Cys Motifs in Autophagy," Ph.D., North Dakota State University, 2021. DOI: https://www.proquest.com/docview/2487343812

Joseph Shin Pak, "Molecular Mechanisms of Receptor Activation during Nervous System Wiring," Ph.D., University of Chicago, 2021. DOI: 10.6082/uchicago.3588

H. Rahmani, "The Structure and Atomic Model of Myosin Filaments from Lethoerus Indicus Using Cryo-Electron Microscopy," Ph.D., Florida State University, 2021.

Hamidreza Rahmani, Wen Ma, Zhongiun Hu, Nadia Daneshparvar, Dianne W. Taylor, J. Andrew McCammon, Thomas C. Irving, Robert J. Edwards, Kenneth A. Taylor, "The myosin II coiled-coil domain atomic structure in its native environment," Proc. Natl. Acad. Sci. USA 118 (14), e2024151118 (2021). DOI: 10.1073/pnas.2024151118 Cited 25 times

Kathryn P. Scherpelz, Songlin Wang, Peter Pytel, Rama S. Madhurapantula, Atul K. Srivastava, Joseph R. Sachleben, Joseph Orgel, Yoshitaka Ishii, Stephen C. Meredith, "Atomic-level differences between brain parenchymal- and cerebrovascular-seeded A[beta] fibrils," Sci. Rep. 11, 247 (2021). DOI: 10.1038/s41598-020-80042-5 Cited 9 times

A.F. Selvia, "STRUCTURAL AND MECHANISTIC INSIGHTS INTO THE ACTIVATION OF PHOSPHOLIPASE C EPSILON BY SMALL GTPASE RAP1A," Masters, Purdue University, 2021.

Z. Shi, "Respiratory Muscle Dysfunction in Mechanically Ventilated Critically Ill Patients," Ph.D., Vrije Univeriteit Amsterdam, 2021.

Taejeong Song, James W. McNamara, Weikang Ma, Maicon Landim-Vieira, Kyoung Hwan Lee, Lisa A. Martin, Judith A. Heiny, John N. Lorenz, Roger Craig, Jose Renato Pinto, Thomas Irving, Sakthivel Sadayappan, "Fast skeletal myosin-binding protein-C regulates fast skeletal muscle contraction," Proc. Natl. Acad. Sci. USA 118 (17), e2003596118 (2021). DOI: 10.1073/pnas.2003596118 Cited 21 times

Zhenwei Song, Thomas Gremminger, Gatikrushna Singh, Yi Cheng, Jun Li, Liming Qiu, Juan Ji, Margaret J. Lange, Xiaobing Zuo, Shi-Jie Chen, Xiaoqin Zou, Kathleen Boris-Lawrie, Xiao Heng, "The three-way junction structure of the HIV-1 PBS-segment binds host enzyme important for viral infectivity," Nucleic Acids Res. 49 (10), 5925-5942 (2021). DOI: 10.1093/nar/gkab342 Cited 10 times

Adriana S. Trujillo, Karen H. Hsu, Joy Puthawala, Meera C. Viswanathan, Amy Loya, Thomas C. Irving, Anthony Cammarato, Douglas M. Swank, Sanford I. Bernstein, "Myosin dilated cardiomyopathy mutation S532P disrupts actomyosin interactions, leading to altered muscle kinetics, reduced locomotion, and cardiac dilation in Drosophila," Mol. Biol. Cell 32 (18), 1611-1791 (2021). DOI: 10.1091/mbc.E21-02-0088 Cited 7 times

M.M. Van Camp, "GAINING INSIGHTS INTO THE CONFORMATIONAL DYNAMICS OF PHOSPHOLIPASE Cb," Ph.D., Purdue University, 2021.

Jing Wang, Neelima Vaddadi, Joseph S. Pak, Yeonwoo Park, Sabrina Quilez, Christina A. Roman, Emilie Dumontier, Joseph W. Thornton, Jean-François Cloutier, Engin Özkan, "Molecular and structural basis of olfactory sensory neuron axon coalescence by Kirrel receptors," Cell Reports 37 (5), 109940 (2021). DOI: 10.1016/j.celrep.2021.109940 Cited 10 times

Sarah G. Whaley, Christopher D. Radka, Chitra Subramanian, Matthew W. Frank, Charles O. Rock, "Malonyl-acyl carrier protein decarboxylase activity promotes fatty acid and cell envelope biosynthesis in Proteobacteria," J. Biol. Chem. 297 (6), 101434 (2021). DOI: 10.1016/j.jbc.2021.101434 Cited 13 times

Chuanwu Xia, Baoying Lou, Zhuji Fu, Al-Walid Mohsen, Anna L. Shen, Jerry Vockley, Jung-Ja P. Kim, "Molecular mechanism of interactions between ACAD9 and binding partners in mitochondrial respiratory complex I assembly," iScience 24 (10), 103153 (2021). DOI: 10.1016/j.isci.2021.103153 Cited 14 times

R. Yadav, "Structural And Functional Studies Of Neisserial Lactoferrin Binding Proteins," Ph.D., Purdue University, 2021.

Ravi Yadav, Srinivas Govindan, Courtney Daczkowski, Andrew Mesecar, Srinivas Chakravarthy, Nicholas Noinaj, "Structural insight into the dual function of LbpB in mediating Neisserial pathogenesis," eLIFE J. 10, e71683 (2021). DOI: 10.7554/eLife.71683 Cited 8 times

Shiv Pratap S. Yadav, Ruben M. Sandoval, Jingfu Zhao, Yifan Huang, Exing Wang, Sudhanshu Kumar, Silvia B. Campos-Bilderback, George Rhodes, Yehia Mechref, Bruce A. Molitoris, Mark C. Wagner, "Mechanism of how carbamylation reduces albumin binding to FcRn contributing to increased vascular clearance," Am. J. Physiol. - Reg. I. 320 (1), F114-F129 (2021). DOI: 10.1152/ajprenal.00428.2020 Cited 13 times

Martijn van de Locht, Sandra Donkervoort, Josine M. de Winter, Stefan Conijn, Leon Begthel, Benno Kusters, Payam Mohassel, Ying Hu, Livija Medne, Colin Quinn, Steven A. Moore, A. Reghan Foley, Gwimoon Seo, Darren T. Hwee, Fady I. Malik, Thomas Irving, Weikang Ma, Henk L. Granzier, Erik-Jan Kamsteeg, Kalyan Immadisetty, Peter Kekenes-Huskey, Jose R. Pinto, Nicol Voermans, Carsten G. Bönnemann, Coen A.C. Ottenheijm, "Pathogenic variants in TNNC2 cause congenital myopathy due to an impaired force response to calcium," J. Clin. Invest. 131 (9), e145700 (2021). DOI: 10.1172/JCI145700 Cited 14 times

Peter O. Awinda, Weikang Ma, Kyrah L. Turner, Jing Zhao, Henry Gong, Mindy S. Thompson, Kenneth S. Campbell, Thomas C. Irving, Bertrand C.W. Tanner, "MgADP Promotes Myosin Head Movement toward Actin at Low [Ca2+] to Increase Force Production and Ca[superscript 2+]-Sensitivity of Contraction in Permeabilized Porcine Myocardial Strips," Int. J. Mol. Sci. 23 (23), 15084 (2022). DOI: 10.3390/ijms232315084 Cited 3 times

A. Ayoub, "Structural and Biochemical Mechanisms of MLL1 Activation on Chromatin," Ph.D., University of Michigan, 2022.

Nicholas Bragagnolo, Gerald F. Audette, "Solution characterization of the dynamic conjugative entry exclusion protein TraG," Str. Dynamics 9, 064702 (2022). DOI: 10.1063/4.0000171 Cited 4 times

A. Bremer, M. Farag, W.M. Borcherds, I. Peran, E.W. Martin, R.V. Pappu, T. Mittag, "Deciphering how naturally occurring sequence features impact the phase behaviours of disordered prion-like domains," Nat. Chem. 14, 196-207 (2022). DOI: 10.1038/s41557-021-00840-w Cited 203 times

F. Cerqueira, "Biochemical Features of Resistant Starch Degradation by Ruminococcus bromii," Ph.D., University of Michigan, 2022.

Filipe M. Cerqueira, Amanda L. Photenhauer, Heidi L. Doden, Aric N. Brown, Ahmed M. Abdel-Hamid, Sarah Moraïs, Edward A. Bayer, Zdzislaw Wawrzak, Isaac Cann, Jason M. Ridlon, Jesse B. Hopkins, Nicole M. Koropatkin, "Sas20 is a highly flexible starch-binding protein in the Ruminococcus bromii cell-surface amylosome," J. Biochem. 298 (5), 101896 (2022). DOI: 10.1016/j.jbc.2022.101896 Cited 9 times

R. Chen, "Investigation of the Molecular Mechanism of the Stress-Triggered Condensation of Poly(A)-Binding Protein," Ph.D., University of Chicago, 2022.

Liang-Yuan Chu, Ann Emery, Niyati Jain, Andrew Sugarman, Nashea Kendrick, Le Luo, William Ford, Ronald Swanstrom, Blanton S. Tolbert, "Encoded Conformational Dynamics of the HIV Splice Site A3 Regulatory Locus: Implications for Differential Binding of hnRNP Splicing Auxiliary Factors," J. Mol. Biol. 434 (18), 167728 (2022). DOI: 10.1016/j.jmb.2022.167728 Cited 4 times

Thuy P. Dao, Yiran Yang, Maria F. Presti, Michael S. Cosgrove, Jesse B. Hopkins, Weikang Ma, Stewart N. Loh, Carlos A. Castañeda, "Mechanistic insights into enhancement or inhibition of phase separation by different polyubiquitin chains," EMBO Rep. 23, e55056 (2022). DOI: 10.15252/embr.202255056 Cited 22 times

J. Dávila-Calderón, B. Tolbert, "Defining the Structural Modulation of Cap-Independent Translation in Enterovirus 71," Ph.D., Ohio State University, 2022.

H. Gong, "X-ray diffraction studies of activation and relaxation in fast and slow rat skeletal muscle," Ph.D., Illinois Institute of Techonolgy, 2022.

Henry M. Gong, Weikang Ma, Michael Regnier, Thomas C. Irving, "Thick filament activation is different in fast- and slow-twitch skeletal muscle," J. Physiol-London 600 (24), 5247-5266 (2022). DOI: 10.1113/JP283574 Cited 8 times

M. Goode, "Purification, Characterization, and Structural Determination of Proteins Vital to Infectious Disease," Ph.D., Arizona State University, 2022.

Xianghong Guan, Narsihmulu Cheryala, Rezaul Md. Karim, Alice Chan, Norbert Berndt, Jun Qi, Gunda I. Georg, Ernst Schönbrunn, "Bivalent BET Bromodomain Inhibitors Confer Increased Potency and Selectivity for BRDT via Protein Conformational Plasticity," J. Med. Chem. 65 (15), 10441-10458 (2022). DOI: 10.1021/acs.jmedchem.2c00453 Cited 10 times

ALnthony Hessel, Weikang Ma, Nicole Mazara, Paige E. Rice, Devin Nissen, Henry Gong, ichel Kuehn, Thomas C. Irving, Wolfgang A. Linke, "Titin force in muscle cells alters lattice order, thick and thin filament protein formation," Proc. Natl. Acad. Sci. USA 119 (48), e2209441119 (2022). DOI: 10.1073/pnas.2209441119 Cited 23 times

Vivek Jani, Wenjing Qian, Shengyao Yuan, Thomas Irving, Weikang Ma, "EMD-57033 Augments the Contractility in Porcine Myocardium by Promoting the Activation of Myosin in Thick Filaments," Int. J. Mol. Sci. 23 (23), 14517 (2022). DOI: 10.3390/ijms232314517 Cited 5 times

Yike Jiang, Ting Zheng, Weiping Jin, Yuxin Shi, Qingrong Huang, "Enhancing Intestinal Permeability of Theaflavin-3,3′-digallate by Chitosan–Caseinophosphopeptides Nanocomplexes," J. Agric. Food Chem. 70 (6), 2029-2041 (2022). DOI: 10.1021/acs.jafc.1c07382 Cited 13 times

Rezaul Md Karim, Leixiang Yang, Lihong Chen, Melissa J. Bikowitz, Junhao Lu, Dylan Grassie, Zachary P. Shultz, Justin M. Lopchuk, Jiandong Chen, Ernst Schönbrunn, "Discovery of Dual TAF1-ATR Inhibitors and Ligand-Induced Structural Changes of the TAF1 Tandem Bromodomain," J. Med. Chem. 65 (5), 4182-4200 (2022). DOI: 10.1021/acs.jmedchem.1c01999 Cited 14 times

Regan M. LeBlanc, Wojciech K. Kasprzak, Andrew P. Longhini, Lukasz T. Olenginski, Fardokht Abulwerdi, Stefano Ginocchio, Brigit Shields, Julie Nyman, Maryia Svirydava, Claudia Del Vecchio, Joseph Ivanic, John S. SchneeklothJr, Bruce A. Shapiro, Theodore Kwaku Dayie, Stuart F.J. Le Grice, "Structural insights of the conserved “priming loop” of hepatitis B virus pre-genomic RNA," J. Biomol. Struct. Dyn. 40 (20), 9761-9773 (2022). DOI: 10.1080/07391102.2021.1934544 Cited 11 times

Wenguang G. Liang, Juwina Wijaya, Hui Wei, Alex J. Noble, Jordan M. Mancl, Swansea Mo, David Lee, John V. :in King, Man Pan, Chang Liu, Carla M. Koehler, Minglei Zhao, Clinton S. Potter, Bridget Carragher, Sheng Li, Wei-Jen Tang, "Structural basis for the mechanisms of human presequence protease conformational switch and substrate recognition," Nat. Commun. 13, 1833 (2022). DOI: 10.1038/s41467-022-29322-4 Cited 4 times

Yaping Liu, Aldrex Munsayac, Ian Hall, Sarah C. Keane, "Solution Structure of NPSL2, A Regulatory Element in the oncomiR-1 RNA," J. Mol. Biol. 434 (18), 167688 (2022). DOI: 10.1016/j.jmb.2022.167688 Cited 8 times

Weikang Ma, Henry Gong, Vivek Jani, Kyoung Hwan Lee, Maicon Landim-Vieira, Maria Papadaki, Jose R. Pinto, M. Imran Aslam, Anthony Cammarato, Thomas Irving, "Myofibril orientation as a metric for characterizing heart disease," Biophys. J. 121 (4), 565-574 (2022). DOI: 10.1016/j.bpj.2022.01.009 Cited 16 times

Weikang Ma, Thomas C. Irving, "Small Angle X-ray Diffraction as a Tool for Structural Characterization of Muscle Disease," Int. J. Mol. Sci. 23 (6), 3052 (2022). DOI: 10.3390/ijms23063052 Cited 31 times

Weikang Ma, Suman Nag, Henry Gong, Lin Qi, ThomasC. Irving, "Cardiac myosin filaments are directly regulated by calcium," J. Gen. Physiol. 154 (12), e202213213 (2022). DOI: 10.1085/jgp.202213213 Cited 25 times

Robert C. Miller, Cody Cummings, Qingqiu Huang, Nozomi Ando, Richard E. Gillilan, "Inline small-angle X-ray scattering-coupled chromatography under extreme hydrostatic pressure," Protein Sci. 31 (12), e4489 (2022). DOI: https://doi.org/10.1002/pro.4489

R.C. Monsen, L.W. DeLeeuw, W.L. Dean, R.D. Gray, S. Chakravarthy, J.B. Hopkins, J.B. Chaires, J.O. Trent, "Long promoter sequences form higher-order G-quadruplexes: an integrative structural biology study of c-Myc, k-Ras and c-Kit promoter sequences," Nucleic Acids Res. 50 (7), 4127-4147 (2022). DOI: 10.1093/nar/gkac182 Cited 27 times

Robert C. Monsen, John O. Trent, Jonathan B. Chaires, "G-quadruplex DNA: A Longer Story," Accounts Chem. Res. 55 (22), 3242-3252 (2022). DOI: 10.1021/acs.accounts.2c00519 Cited 33 times

Indranil Arun Mukherjee, Clinton Gabel, Nicholas Noinaj, Joseph Bondy-Denomy, Leifu Chang, "Structural basis of AcrIF24 as an anti-CRISPR protein and transcriptional suppressor," Nat. Chem. Biol. 18, 1417-1424 (2022). DOI: 10.1038/s41589-022-01137-w Cited 6 times

Nirupa Nagaratnam, Jose M. Martin-Garcia, Jay-How Yang, Matthew R. Goode, Gihan Ketawala, Felicia M. Craciunescu, James D. Zook, Manashi Sonowal, Dewight Williams, Thomas D. Grant, Raimund Fromme, Debra T. Hansen, Petra Fromme, "Structural and biophysical properties of FopA, a major outer membrane protein of Francisella tularensis," PLoS One 17 (8), e0267370 (2022). DOI: 10.1371/journal.pone.0267370 Cited 4 times

NKH Ostan, "Using Integrative Unstructural’ Biology to Characterize the Gram-negative Lactoferrin Receptor," Ph.D., University of Toronto, 2022.

R.W. Penhallurick, "Pressure Adaptations in Deep-Sea Dihydrofolate Reductases," Ph.D., Georgetown University, 2022.

Nicole A. Perry-Hauser, Jesse B. Hopkins, Ya Zhuo, Chen Zheng, Ivette Perez, Kathryn M. Schultz, Sergey A. Vishnivetskiy, Ali I. Kaya, Pankaj Sharma, Kevin N. Dalby, Ka Young Chung, Candice S. Klug, Vsevolod V. Gurevich, T.M. Iverson, "The Two Non-Visual Arrestins Engage ERK2 Differently," J. Mol. Biol. 434 (7), 167465 (2022). DOI: 10.1016/j.jmb.2022.167465 Cited 14 times

Mariana Reis, Yvette Alania, Ariene Leme-Kraus, Robert Free, Derk Joester, Weikang Ma, Thomas Irving, Ana K. Bedran-Russo, "The stoic tooth root: how the mineral and extracellular matrix counterbalance to keep aged dentin stable," Acta Biomater. 138, 351-360 (2022). DOI: 10.1016/j.actbio.2021.10.051 Cited 6 times

J. San Emeterio, "STRUCTURAL STUDIES OF VIRAL RNA THROUGH SMALL ANGLE X-RAY SCATTERING AND CONTRAST VARIATION," Ph.D., Cornell University, 2022.

Josue San Emeterio, Suzette A. Pabit, Lois Pollack, "Contrast variation SAXS: Sample preparation protocols, experimental procedures, and data analysis," Methods in Enzymology, J. Abelson, M. Simon, G. Verdine, A. Pyle, eds., Elsevier, 2022, 41 - 83. DOI: 10.1016/bs.mie.2022.08.007

Nidhi Sharma, Marlo K. Thompson, Jennifer F. Arrington, Dava M. Terry, Srinivas Chakravarthy, Peter E. Prevelige, Aishwarya Prakash, "Novel interaction interfaces mediate the interaction between the NEIL1 DNA glycosylase and mitochondrial transcription factor A," Front. Cell Dev. Biol., 10, 893806 (2022). DOI: 10.3389/fcell.2022.893806 Cited 5 times

Kyle P. Smith, Woonghee Lee, Marco Tonelli, Yeongjoon Lee, Samuel H. Light, Gabriel Cornilescu, Srinivas Chakravarthy, "Solution structure and dynamics of the mitochondrial-targeted GTPase-activating protein (GAP) VopE by an integrated NMR/SAXS approach," Protein Sci. 31 (5), e4282 (2022). DOI: 10.1002/pro.4282

M.J. Stachowski, "The Role of Glycogen Synthase Kinase 3 β (Gsk-[beta]) at the Cardiac Myofilament," Ph.D., Loyola University Chicago, 2022.

MarisaJ. Stachowski-Doll, Maria Papadaki, Thomas G. Martin, Weikang Ma, Henry M. Gong, Stephanie Shao, Shi Shen, NithaA. Muntu, Mohit Kumar, Edith Perez, Jody L. Martin, Christine S. Moravec, Sakthivel Sadayappan, Stuart G. Campbell, Thomas Irving, JonathanA. Kirk, "GSK-3[beta] Localizes to the Cardiac Z-Disc to Maintain Length Dependent Activation," Circ. Res. 130 (6), 871-886 (2022). DOI: 10.1161/CIRCRESAHA.121.319491 Cited 11 times

Amy L. Stiegler, Kimberly J. Vish, Titus J. Boggon, "Tandem engagement of phosphotyrosines by the dual SH2 domains of p120RasGAP," Structure 30 (12), 1603-1614 (2022). DOI: 10.1016/j.str.2022.10.009 Cited 4 times

Chitra Subramanian, Maxime G. Cuypers, Christopher D. Radka, Stephen W. White, Charlies O. Rock, "Domain architecture and catalysis of the Staphylococcus aureus fatty acid kinase," J. Biol. Chem. 298 (6), 101993 (2022). DOI: 10.1016/j.jbc.2022.101993 Cited 8 times

Mahbubunnabi Tamal, Murad Althobaiti, Abdul-Hakeem Alomari, umaiya Tabssum Dipty, Khadiza Tun Suha, Maryam Al-Hashim, "Synchrotron X-ray Radiation (SXR) in Medical Imaging: Current Status and Future Prospects," Appl. Sci. 12 (8), 3790 (2022). DOI: 10.3390/app12083790 Cited 4 times

Jill Trewhella, Patrice Vachette, Jan Bierma, Clement Blanchet, Emre Brookes, Srinivas Chakravarthy, Leonie Chatzimagas, Thomas E. Cleveland IV, Nathan Cowieson, Ben Crossett, Anthony P. Duff, Daniel Franke, Frank Gabel, Richard E. Gillilan, Melissa Graewert, Alexander Grishaev, J. Mitchell Guss, Michal Hammel, Jesse Hopkins, Qingqui Huang, Jochen S. Hub, Greg L. Hura, Thomas C. Irving, Cy Michael Jeffries, Cheol Jeong, Nigel Kirby, Susan Krueger, Anne Martel, Tsutomu Matsui, Na Li, Javier Pérez, Lionel Porcar, Thierry Prangé, Ivan Rajkovic, Mattia Rocco, Daniel J. Rosenberg, Timothy M. Ryan, Soenke Seifert, Hiroshi Sekiguchi, Dmitri Svergun, Susana Teixeira, Aurelien Thureau, Thomas M. Weiss, Andrew E. Whitten, Kathleen Wood, Xiaobing Zuo, "A round-robin approach provides a detailed assessment of biomolecular small-angle scattering data reproducibility and yields consensus curves for benchmarking," Acta Crystallogr. D 78 (11), 1315-1336 (2022). DOI: 10.1107/S2059798322009184 Cited 17 times

A.C. Wickramaratne, "Modulation of Nocturnin Phosphatase Activity through the Disordered Amino Terminus," Ph.D., University of Texas, 2022.

AnushkacC. Wickramaratne, Li Li, Jesse B. Hopkins, Lukasz A. Joachimiak, Carla B. Green, "The Disordered Amino Terminus of the Circadian Enzyme Nocturnin Modulates Its NADP(H) Phosphatase Activity by Changing Protein Dynamics," Biochemistry-US 61 (11), 1091-1102 (2022). DOI: 10.1021/acs.biochem.2c00072 Cited 4 times

Zhen Xu, Saif Khan, Nicholas J. Schnicker, Sheila Baker, "Pentameric assembly of the Kv2.1 tetramerization domain," Acta Crystallogr. D 78 (6), 792-802 (2022). DOI: 10.1107/S205979832200568X

Ruchi Yadav, Valentine V. Courouble, Sanjay K. Dey, Jerry Joe E.K. Harrison, Jennifer Timm, Jesse B. Hopkins, Ryan L. Slack, Stefan G. Sarafianos, Francesc X. Ruiz, Patrick R. Griffin, Eddy Arnold, "Biochemical and structural insights into SARS-CoV-2 polyprotein processing by Mpro," Sci. Advances 8 (49), eadd2191 (2022). DOI: 10.1126/sciadv.add2191 Cited 15 times

Shiv Pratap Singh Yadav, Aiying Yu, Jingfu Zhao, Jasdeep Singh, Saloni Kakkar, Srinivas Chakravarthy, Yehia Mechref, Bruce Molitoris, Mark C. Wagner, "Glycosylation of a key cubilin Asn residue results in reduced binding to albumin," J. Biol. Chem. 298 (10), 102371 (2022). DOI: 10.1016/j.jbc.2022.102371

Alexander E. Yarawsky, Jesse B. Hopkins, Leonie Chatzimagas, Jochen S. Hub, Andrew B. Herr, "Solution Structural Studies of Pre-amyloid Oligomer States of the Biofilm Protein Aap," J. Mol. Biol. 434 (16), 167708 (2022). DOI: 10.1016/j.jmb.2022.167708 Cited 5 times

Chen-Ching Yuan, Katarzyna Kazmierczak, Jingsheng Liang, Weikang Ma, Thomas C. Irving, Danuta Szczesna-Cordary, "Molecular basis of force-pCa relation in MYL2 cardiomyopathy mice: Role of the super-relaxed state of myosin," Proc. Natl. Acad. Sci. USA 119 (8), e2110328119 (2022). DOI: 10.1073/pnas.2110328119 Cited 26 times

Ricardo Hernandez Arriaza, Brendan Abiskaroon, Megha Patel, Leily Daneshian, Anna Kluza, Simon Snoeck, Maxwell B. Watkins, Jesse B. Hopkins, Thomas Van Leeuwen, Miodrag Grbic, Vojislava Grbic, Tomasz Borowski, Maksymilian Chruszcz, "Structural and functional studies reveal the molecular basis of substrate promiscuity of a glycosyltransferase originating from a major agricultural pest," J. Biol. Chem. 299 (12), 105421 (2023). DOI: 10.1016/j.jbc.2023.105421 Cited 3 times

Amanda S. Byer, Xiaokun Pei, Michael G. Patterson, Nozomi Ando, "Small-angle X-ray scattering studies of enzymes," Curr. Opin. Chem. Biol. 72, 102232 (2023). DOI: 10.1016/j.cbpa.2022.102232 Cited 14 times

V. Courable, "Development and Application of Mass Spectrometry-Based Proteomics For: I. Structural Proteomic Guided Investigation of SARS-CoV-2 Polyproteins and Non-Structural Proteins & II. Extending Chemoproteomic Approaches to Decipher the Regulatory Network of LRH-1," Ph.D., Scripps Research Institute, 2023.

Sarasi K.K. Galagedera, Thuy P. Dao, Suzanne E. Enos, Antara Chaudhuri, Jeremy D. Schmit, Carlos A. Castañeda, "Polyubiquitin ligand-induced phase transitions are optimized by spacing between ubiquitin units," Proc. Natl. Acad. Sci. USA 120 (42), e2306638120 (2023). DOI: 10.1073/pnas.2306638120 Cited 3 times

Michelle Rodriguez Garcia, Jeffrey Schmeckpeper, Maicon Landim-Vieira, Isabella Leite Coscarella, Xuan Fang, Weikang Ma, Payton A. Spran, Shengyao Yuan, Lin Qi, Aida Rahimi Kahmini, M. Benjamin Shoemaker, James B. Atkinson, Peter M. Kekenes-Huskey, Thomas C. Irving, Prescott Bryant Chase, Björn C. Knollmann, Jose Renato Pinto, "Disruption of Z-Disc Function Promotes Mechanical Dysfunction in Human Myocardium: Evidence for a Dual Myofilament Modulatory Role by Alpha-Actinin 2," Int. J. Mol. Sci. 24 (19), 14572 (2023). DOI: 10.3390/ijms241914572 Cited 2 times

C. Haddad, "The Physicochemical Characterization of Proteins and RNA in Positive Strand RNA Viruses," Ph.D., Ohio State University, 2023.

Kendra A. Ireland, Chase M. Kayrouz, Jonathan Huang, Mohammad R. Seyedsayamdost, Katherine M. Davis, "Structural Characterization and Ligand-Induced Conformational Changes of SenB, a Se-Glycosyltransferase Involved in Selenoneine Biosynthesis," Biochemistry-US 62 (23), 3337-3342 (2023). DOI: 10.1021/acs.biochem.3c00452 Cited 3 times

Vivek Jani, M. Imran Aslam, Axel J. Fenwick, Weikang Ma, Henry Gong, Gregory Milburn, Devin Nissen, Ilton M. Cubero Salazar, Olivia Hanselman, Monica Mukherjee, Marc K. Halushka, Kenneth B. Margulies, Kenneth S. Campbell, Thomas C. Irving, David A. Kass, Steven Hsu, "Right Ventricular Sarcomere Contractile Depression and the Role of Thick Filament Activation in Human Heart Failure With Pulmonary Hypertension," Circulation 147 (25), 1919-1932 (2023). DOI: 10.1161/CIRCULATIONAHA.123.064717 Cited 7 times

Kristina B. Kooiker, Saffie Mohran, Kyrah L. Turner, Weikang Ma, Amy Martinson, Galina Flint, Lin Qi, Chengqian Gao, Yahan Zheng, Timothy S. McMillen, Christian Mandrycky, Max Mahoney-Schaefer, Jeremy C. Freeman, Elijah Gabriela Cost Arenas, An-Yu Tu, Thomas C. Irving, Michael A. Geeves, Bertrand C.W. Tanner, Michael Regnier, Jennifer Davis, Farid Moussavi-Haram, "Danicamtiv Increases Myosin Recruitment and Alters Cross-Bridge Cycling in Cardiac Muscle," Circ. Res. 133 (5), 430-443 (2023). DOI: 10.1161/CIRCRESAHA.123.322629 Cited 14 times

Maicon Landim-Vieira, Weikang Ma, Taejeong Song, Hosna Rastegarpouyani, Henry Gong, Isabella Leite Coscarella, Sylvia J.P. Bogaards, Stefan P. Conijn, Coen A.C. Ottenheijm, Hyun S. Hwang, Maria Papadaki, Bjorn C. Knollmann, Sakthivel Sadayappan, Thomas C. Irving, Vitold E. Galkin, P. Bryant Chase, Jose Renato Pinto, "Cardiac troponin T N-domain variant destabilizes the actin interface resulting in disturbed myofilament function," Proc. Natl. Acad. Sci. USA 120 (23), e2221244120 (2023). DOI: 10.1073/pnas.2221244120 Cited 10 times

JA Ling, "Structures and non-canonical functions of E3 ubiquitin ligases in DNA damage bypass," Ph.D., Iowa State University, 2023.

Sicong Ma, Anita Kotar, Ian Hall, Scott Grote, Silvi Rouskin, Sarah C. Keane, "Structure of pre-miR-31 reveals an active role in Dicer–TRBP complex processing," Proc. Natl. Acad. Sci. USA 120 (39), e2300527120 (2023). DOI: 10.1073/pnas.2300527120 Cited 3 times

Weikang Ma, Kyoung Hwan Lee, Christine E. Delligatti, M. Therese Davis, Yahan Zheng, Henry Gong, Jonathan A. Kirk, Roger Craig, Thomas Irving, "The structural and functional integrities of porcine myocardium are mostly preserved by cryopreservation," J. Gen. Physiol. 155 (9), e202313345 (2023). DOI: 10.1085/jgp.202313345 Cited 7 times

Weikang Ma, Timothy S. McMillen, Matthew Carter Childers, Henry Gong, Mihcael Regnier, Thomas C. Irving, "Structural OFF/ON transitions of myosin in relaxed porcine myocardium predict calcium-activated force," Proc. Natl. Acad. Sci. USA 120 (5), e2207615120 (2023). DOI: 10.1073/pnas.2207615120 Cited 21 times

Matthew Mackeown, Yu-An Kung, Jesse Davila-Calderon, William P. Ford, Le Luo, Barrington Henry, Mei-Ling Li, Gary Brewer, Shin-Ru Shih, Blanton S. Tolbert, "The 5'UTR of HCoV-OC43 adopts a topologically constrained structure to intrinsically repress translation," J. Biol. Chem. 299 (4), 103028 (2023). DOI: 10.1016/j.jbc.2023.103028 Cited 5 times

S. Mohran, "The modulation of myosin function: How small molecules and sarcomeric mutations impact actomyosin interactions," Ph.D., University of Washington, 2023.

Robert C. Monsen, Eugene Y.D. Chua, Jesse B. Hopkins, Jonathan B. Chaires, John O. Trent, "Structure of a 28.5 kDa duplex-embedded G-quadruplex system resolved to 7.4 Å resolution with cryo-EM," Nucleic Acids Res. 51 (4), 1943-1959 (2023). DOI: 10.1093/nar/gkad014 Cited 15 times

Sherwin P. Montaño, Sally-J. Rowland, James R. Fuller, Mary E. Burke, Alasdair I. MacDonald, Martin R. Boocock, W. Marshall Stark, Phoebe A. Rice, "Structural basis for topological regulation of Tn[subscript 3] resolvase," Nucleic Acids Res. 51 (3), 1001-1018 (2023). DOI: 10.1093/nar/gkac733 Cited 1 times

David C. Moses, "Intrinsically disordered proteins as physicochemical sensors," Ph.D., University of California, Merced, 2023.

Chinemerem P. Ogbu, Srajan Kapoor, Alex J. Vecchio, "Structural Basis of Clostridium perfringens Enterotoxin Activation and Oligomerization by Trypsin," Toxins 15 (11), 637 (2023). DOI: 10.3390/toxins15110637 Cited 4 times

Jessica Marie Priest, "Structural Insights into the Formation of Axon Guidance Complexes," Ph.D., University of Chicago, 2023.

Momcilo Prodanovic, Yiwei Wang, SrboljubvM. Mijailovich, Thomas Irving, "Using Multiscale Simulations as a Tool to Interpret Equatorial X-ray Fiber Diffraction Patterns from Skeletal Muscle," Int. J. Mol. Sci. 24 (10), 8474 (2023). DOI: 10.3390/ijms24108474 Cited 2 times

Christopher P. Ptak, Tabitha A. Peterson, Jesse B. Hopkins, Christopher A. Ahern, Michael E. Shy, Robert C. Piper, "Homomeric interactions of the MPZ Ig domain and their relation to Charcot-Marie-Tooth disease," Brain 146 (12), 5110-5123 (2023). DOI: 10.1093/brain/awad258 Cited 6 times

A.P. Puppala, "Architecture of the Terminal Complex of Selenocysteine Synthesis in Humans," Ph.D., University of Illinois at Chicago, 2023.

A. Sandouk, "SH2/SH2-Mediated Domain-Swapped Dimerization of GRB2 and Its Implications for GRB2 Function," Ph.D., University of Iowa, 2023.

Aline Sandouk, Zhen Xu, Sankar Baruah, Mikaela Tremblay, Jesse B. Hopkins, Srinivas Chakravarthy, Lokesh Gakhar, Nicholas J. Schnicker, Jon C.D. Houtman, "GRB2 dimerization mediated by SH2 domain-swapping is critical for T cell signaling and cytokine production," Sci. Rep. 13, 3505 (2023). DOI: 10.1038/s41598-023-30562-7 Cited 6 times

K. Srinivasan, "Characterizing synthetic antigen-binding fragments for isolation of the TOC complex," Ph.D., Purdue University, 2023.

Karthik Srinivasan, Satchal K. Erramilli, Srinivas Chakravarthy, Adrian Gonzalez, Anthony Kossiakoff, Nincholas Noinaj, "Characterization of synthetic antigen binding fragments targeting Toc75 for the isolation of TOC in A. thaliana and P. sativum," Structure 31 (5), 595-606 (2023). DOI: 10.1016/j.str.2023.03.002 Cited 2 times

Cheng-Guo Wu, Vijaya K. Balakrishnan, Ronald A. Merrill, Pankaj S. Parihar, Kirill Konovolov, Yu-Chia Chen, Zhen Xu, Hui Wei, Ramya Sundaresan, Qiang Cui, Brian E. Wadzinski, Mark R. Swingle, Alla Musiyenko, Wendy K. Chung, Richard E. Honkanen, Aussie Suzuki, Xuhui Huang, Stefan Strack, Yongna Xing, "B56[delta] long-disordered arms form a dynamic PP2A regulation interface coupled with global allostery and Jordan’s syndrome mutations," Proc. Natl. Acad. Sci. USA 121 (1), e2310727120 (2023). DOI: 10.1073/pnas.2310727120 Cited 3 times

Alexander E. Yarawsky, Andrea L. Ori, Lance R. English, Steven T. Whitten, Andrew B. Herr, "Convergent behavior of extended stalk regions from staphylococcal surface proteins with widely divergent sequence patterns," Protein Sci. 32 (8), e4707 (2023). DOI: 10.1002/pro.4707 Cited 1 times

Arnold J. Apostol, Nicholas J. Bragagnolo, Christina S. Rodriguez, Gerald F. Audette, "Structural insights into the disulfide isomerase and chaperone activity of TrbB of the F plasmid type IV secretion system," Curr. Res. Struct. Biol. 8, 100156 (2024). DOI: 10.1016/j.crstbi.2024.100156

Michael C. Baxa, Xiaoxuan Lin, Cedrick D. Mukinay, Srinivas Chakravarthy, Joseph R. Sachleben, Sarah Antilla, Nina Hartrampf, Joshua A. Riback, Isabelle A. Gagnon, Bradley L. Pentelute, Patricia L Clark, Tobin R. Sosnick, "How hydrophobicity, side chains, and salt affect the dimensions of disordered proteins," Protein Sci. 33 (5), e4986 (2024). DOI: 10.1002/pro.4986 Cited 1 times

Cody Caba, Megan Black, Yujue Liu, Ashley A. DaDalt, Josh Mallare, Lixin Fan, Rachel J. Harding, Yun-Xing Wang, Panayiotis O. Vacratsis, Rui Huang, Zhihao Zhuang, Yufeng Tong, "Autoinhibition of ubiquitin-specific protease 8: Insights into domain interactions and mechanisms of regulation," J. Biol. Chem. 300 (10), 107727 (2024). DOI: 10.1016/j.jbc.2024.107727

Ruofan Chen, Hendrik Glauninger, Darren N. Kahan, Julia Shangguan, Joseph R. Sachleben, Joshua A. Riback, D.Allan Drummond, Tobin R. Sosnick, "HDX–MS finds that partial unfolding with sequential domain activation controls condensation of a cellular stress marker," Proc. Natl. Acad. Sci. USA 121 (13), 2321606121 (2024). DOI: 10.1073/pnas.2321606121 Cited 8 times

Claire Overly Cottom, Robert Stephenson, Dante Ricci, Lixinhao Yang, James C. Gumbart, Nicholas Noinaj, "Structural characterization of the POTRA domains from A. baumannii reveals new conformations in BamA," Structure 32 (11), 2039-2048 (2024). DOI: 10.1016/j.str.2024.08.013

Thuy P. Dao, Anitha Rajendran, Sarasi K.K. Galagedera, William Haws, Carlos A. Castañeda, "Short disordered termini and proline-rich domain are major regulators of UBQLN1/2/4 phase separation," Biophys. J. 123 (11), 1449-1457 (2024). DOI: 10.1016/j.bpj.2023.11.3401 Cited 5 times

Ian Hall, Kaitlyn Zablock, Raeleen Sobetski, Chase A. Weidmann, Sarah C. Keane, "Functional Validation of SAM Riboswitch Element A from Listeria monocytogenes," Biochemistry-US 63 (20), 2621-2631 (2024). DOI: 10.1021/acs.biochem.4c00247

Anthony L. Hessel, Nichlas M. Engels, Michel N. Kuehn, Devin Nissen, Rachel L. Sadler, Weikang Ma, Thomas C. Irving, Wolfgang A. Linke, Samantha P. Harris, "Myosin-binding protein C regulates the sarcomere lattice and stabilizes the OFF states of myosin heads," Nat. Commun. 15, 2628 (2024). DOI: 10.1038/s41467-024-46957-7 Cited 7 times

Anthony L. Hessel, Michel N. Kuehn, Seong-Won Han, Weikang Ma, Thomas C. Irving, Brent A. Momb, Taejeong Song, Sakthivel Sadayappan, Wolfgang A. Linke, Bradley M. Palmer, "Fast myosin binding protein C knockout in skeletal muscle alters length-dependent activation and myofilament structure," Commun. Biol. 7, 648 (2024). DOI: 10.1038/s42003-024-06265-8

Anthony L. Hessel, Michel N. Kuehn, Bradley M. Palmer, Devin Nissen, Dhruv Mishra, Venus Joumaa, Johanna K. Freundt, Weikang Ma, Kiisa C. Nishikawa, Thomas C. Irving, Wolfgang A. Linke, "The distinctive mechanical and structural signatures of residual force enhancement in myofibers," Proc. Natl. Acad. Sci. USA 121 (52), e2413883121 (2024). DOI: 10.1073/pnas.2413883121 Cited 1 times

Andrea Holla, Erik W. Martin, Thomas Dannenhoffer-Lafage, Kiersten M. Ruff, Sebastian L.B. König, Mark F. Nüesch, Aritra Chowdhury, John M. Louis, Andrea Soranno, Daniel Nettels, Rohit V. Pappu, Robert B. Best, Tanja Mittag, Benjamin Schuler, "Identifying Sequence Effects on Chain Dimensions of Disordered Proteins by Integrating Experiments and Simulations," JACS Au 4 (12), 4729-4743 (2024). DOI: 10.1021/jacsau.4c00673

JB Hopkins, "BioXTAS RAW 2: new developments for a free open-source program for small-angle scattering data reduction and analysis," J. Appl. Crystallogr. 57 (1), 194-208 (2024). DOI: 10.1107/S1600576723011019 Cited 19 times

Vivek P Jani, Taejeong Song, Chengqian Gao, Henry Gong, Sakthivel Sadayappan, David A Kass, Thomas C Irving, Weikang Ma, "The structural OFF and ON states of myosin can be decoupled from the biochemical super- and disordered-relaxed states," PNAS Nexus 3 (2), pgae039 (2024). DOI: 10.1093/pnasnexus/pgae039 Cited 7 times

B. Jernberg, "Structural Basis of Key Conserved Cell-Surface Signaling Pathways Involved in Iron Import," Ph.D., North Dakota State University, 2024.

Jiranun Jiratrakanvong, Jinjian Shao, Jiaqi Li, Miguel Menedez Alvarez, Xintian Li, Prajwal Das, Grant Nikseresht, Nikhil Miskin, Ran Huo, Jules Nabon, Tristan Leduc, Eric Zhang, Weikang Ma, Gady Agam, Thomas C. Irvin, "MuscleX: Data analysis software for fiber diffraction patterns from muscle," J. Synchrotron Rad. 31 (5), 1401-1408 (2024). DOI: 10.1107/S1600577524006167 Cited 2 times

Kristina Kooiker, Qing-Fen Gan, Ming Yu, Na Sa, Saffie Mohran, Yuanhua Cheng, Galina Flint, Stephanie Neys, Chengqian Gao, Devin Nissen, Tim McMillen, Anthony Asencio, Weikang Ma, Thomas C. Irving, Farid Moussavi-Harami, Michael Regnier, "Mechanisms of a novel regulatory light chain dependent cardiac myosin inhibitor," J. Gen. Physiol. 156 (10), e202313503 (2024). DOI: 10.1085/jgp.202313503 Cited 1 times

David A. Korasick, Luckio F. Owuocha, Pramod K. Kandoth, John J. Tanner, Melissa G. Mitchum, Lesa J. Beamer, "Structural and functional analysis of two SHMT8 variants associated with soybean cyst nematode resistance," FEBS J. 291 (2), 323-337 (2024). DOI: 10.1111/febs.16971 Cited 5 times

Yevhenii Kyriukha, Maxwell B. Watkins, Jennifer M. Redington, Nithya Chintalapati, Abhishek Ganti, Reza Dastvan, Vladimir N. Uversky, Jesse B. Hopkins, Nicola Pozzi, Sergey Korolev, "The strand exchange domain of tumor suppressor PALB2 is intrinsically disordered and promotes oligomerization-dependent DNA compaction," iScience 27 (12), 111259 (2024). DOI: 10.1016/j.isci.2024.111259

Qi Li, Vasudev Tangry, David P. Allen, Kevin D. Seibert, Ken K. Qian, Norman J. Wagner, "Surface-mediated spontaneous emulsification of the acylated peptide, semaglutide," Proc. Natl. Acad. Sci. USA 121 (5), e2305770121 (2024). DOI: 10.1073/pnas.2305770121 Cited 1 times

S. Ma, "Structure and Targeting of Precursor MicroRNA-31: From Mechanism to Application," Ph.D., University of Michigan, 2024.

Weikang Ma, Carlos L. del Rio, Lin Qi, Momcilo Prodanovic, Srboljub Mijailovich, Christopher Zambataro, Henry Gong, Rafael Shimkunas, Sampath Gollapudi, Suman Nag, Thomas C. Irving, "Myosin in autoinhibited off state(s), stabilized by mavacamten, can be recruited in response to inotropic interventions," Proc. Natl. Acad. Sci. USA 121 (8), e2314914121 (2024). DOI: 10.1073/pnas.2314914121 Cited 2 times

Saffie Mohran, Timothy S. McMillen, Christian Mandrycky, An-Yue Tu, Kristina B. Kooiker, Wenjing Qian, Stephanie Neys, Brayan Osegueda, Farid Moussavi-Harami, Thomas C. Irving, Michael Regnier, Weikang Ma, "Calcium has a direct effect on thick filament activation in porcine myocardium," J. Gen. Physiol. 156 (11), e202413545 (2024). DOI: 10.1085/jgp.202413545

David Moses, Karina Guadalupe, Feng Yu, Eduardo Flores, Anthony R. Perez, Ralph McAnelly, Nora M. Shamoon, Gagandeep Kaur, Estefania Cuevas-Zepeda, Andrea D. Merg, Erik W. Martin, Alex S. Holehouse, Shahar Sukenik, "Structural biases in disordered proteins are prevalent in the cell," Nat. Struct. Mol. Biol. 31, 283-292 (2024). DOI: 10.1038/s41594-023-01148-8 Cited 17 times

Shreya Mukhopadhyay, Subeksha Subedi, Jesse B. Hopkins, Angel Ugrinov, Srinivas Chakravarthy, Christopher L. Colbert, Sangita C. Sinha, "Invariant BECN1 CXXC motifs bind Zn[superscript 2+] and regulate structure and function of the BECN1 intrinsically disordered region," Autophagy 20 (2), 380-396 (2024). DOI: 10.1080/15548627.2023.2259707

Megan J. Myers, Zhen Xu, Benjamin J. Ryan, Zachary R. DeMars, Miranda J. Ridder, David K. Johnson, Christina N. Krute, Tony S. Flynn, Maithri M. Kashipathy, Kevin P. Battaile, Nicholas Schnicker, Scott Lovell, Bret D. Freudenthal, Jeffrey L. Bose, "Molecular insights into the structure and function of the Staphylococcus aureus fatty acid kinase," J. Biol. Chem. 300 (12), 107920 (2024). DOI: 10.1016/j.jbc.2024.107920

Vikas Navratna, Arvind Kumar, Jaimin K. Rana, Shyamal Mosalaganti, "Structure of the human heparan-[alpha]-glucosaminide N-acetyltransferase (HGSNAT)," eLIFE J. 13, RP93510 (2024). DOI: 10.7554/eLife.93510 Cited 3 times

Nicholas K.H. Ostan, Gregory B. Cole, Flora Zhiqi Wang, Sean E. Reichheld, Gaelen Moore, Chuxi Pan, Ronghua Yu, Christine Chieh-Lin Lai, Simon Sharpe, Hyun O. Lee, Anthony B. Schryvers, Trevor F. Moraes, "A secreted bacterial protein protects bacteria from cationic antimicrobial peptides by entrapment in phase-separated droplets," PNAS Nexus 3 (4), pgae139 (2024). DOI: 10.1093/pnasnexus/pgae139 Cited 3 times

Brian Paul, Eric M. Furst, Abraham M. Lenhoff, Norman J. Wagner, Susana C.M. Teixeira, "Combined Effects of Pressure and Ionic Strength on Protein–Protein Interactions: An Empirical Approach," Biomacromolecules 25 (1), 338-348 (2024). DOI: 10.1021/acs.biomac.3c01001

Francesco Pesce, Anne Bremer, Giulio Tesei, Jesse B. Hopkins, Christy R. Grace, Tanja Mittag, Kresten Lindorff-Larsen, "Design of intrinsically disordered protein variants with diverse structural properties," Sci. Advances 10 (35), eadm9926 (2024). DOI: 10.1126/sciadv.adm9926 Cited 4 times

Amanda L. Photenhauer, Rosendo C. Villafuerte-Vega, Filipe M. Cerqueira, Krista M. Armbruster, Filip Mareček, Tiantian Chen, Zdzislaw Wawrzak, Jesse B. Hopkins, Craig W. Vander Kooi, Štefan Janeček, Brandon T. Ruotolo, Nicole M. Koropatkin, "The Ruminococcus bromii amylosome protein Sas6 binds single and double helical [alpha]-glucan structures in starch," Nat. Struct. Mol. Biol. 31, 255-265 (2024). DOI: 10.1038/s41594-023-01166-6 Cited 4 times

Jessica M. Priest, Ev L. Nichols, Robert G. Smock, Jesse B. Hopkins, Juan L. Mendoza, Rob Meijers, Kang Shen, Engin Özkan, "Structural insights into the formation of repulsive netrin guidance complexes," Sci. Advances 10 (7), eadj8083 (2024). DOI: 10.1126/sciadv.adj8083 Cited 1 times

Isabel Pérez-Jover, Kristy Rochon, Di Hu, Mukesh Mahajan, Pooja Madan Mohan, Isaac Santos-Pérez, Julene Ormaetxea Gisasola, Juan Manuel Martinez Galvez, Jon Agirre, Xin Qi, Jason A. Mears, Anna V. Shnyrova, Rajesh Ramachandran, "Allosteric control of dynamin-related protein 1 through a disordered C-terminal Short Linear Motif," Nat. Commun. 15, 52 (2024). DOI: 10.1038/s41467-023-44413-6 Cited 4 times

Sandeep K. Ravala, Sendi Rafael Adame-Garcia, Sheng Li, Chun-Liang Chen, Michael A. Cianfrocco, J. Silvio Gutkind, Jennifer N. Cash, John J.G. Tesmer, "Structural and dynamic changes in P-Rex1 upon activation by PIP[subscript 3] and inhibition by IP[subscript 4]," eLIFE J. 12, RP92822 (2024). DOI: 10.7554/eLife.92822 Cited 1 times

T. Michael Sabo, John O. Trent, Jonathan B. Chaires, Robert C. Monsen, "Strategy for modeling higher-order G-quadruplex structures recalcitrant to NMR determination," Methods 230, 9-20 (2024). DOI: 10.1016/j.ymeth.2024.07.004 Cited 1 times

S. Sanchez-Martinez, K. Nguyen, S. Biswas, V. Nicholson, J. Ramirez, S. Kc, A. Akter, C. Childs, E.K. Meese, E.T. Usher, G.M. Ginell, F. Yu, E. Gollub, M. Malferrari, F. Francia, G. Venturoli, E.W. Martin, F. Caporaletti, G. Giubertoni, S. Woutersen, S. Sukenik, D.N. Woolfson, A.S. Holehouse, T.C. Boothby, A.V. Romanyuk, "Labile assembly of a tardigrade protein induces biostasis," Protein Sci. 33 (4), e4941 (2024). DOI: 10.1002/pro.4941 Cited 3 times

Chandrasekar Sanyasi, Susmida Seni Balakrishnan, Thirunavukkarasu Chinnasamy, Nagarajan Venugopalan, Palani Kandavelu, Renu Batra-Safferling, Suresh Kumar Muthuvel, "Insights on the dynamic behavior of protein disulfide isomerase in the solution environment through the SAXS technique," In Silico Pharm. 12, 23 (2024). DOI: 10.1007/s40203-024-00198-0

Diego E. Sastre, Nazneen Sultana, Marcos V.A.S. Navarro, Maros Huliciak, Jonathan Du, Javier O. Cifuente, Maria Flowers, Xu Liu, Pete Lollar, Beatriz Trastoy, Marcelo E. Guerin, Eric J. Sundberg, "Human gut microbes express functionally distinct endoglycosidases to metabolize the same N-glycan substrate," Nat. Commun. 15, 5123 (2024). DOI: 10.1038/s41467-024-48802-3 Cited 3 times

Jacob L. Thelen, Wellington Leite, Volker S. Urban, Hugh M. O’Neill, Alexander V. Grishaev, Joseph E. Curtis, Susan Krueger, Maria Monica Castellanos, "Morphological Characterization of Self-Amplifying mRNA Lipid Nanoparticles," ACS Nano 18 (2), 1464-1476 (2024). DOI: 10.1021/acsnano.3c08014 Cited 13 times

Kyrah L. Turner, Blake J.Vander Top, Kristina B. Kooiker, Saffie Mohran, Christian Mandrycky, Tim McMillen, Michael Regnier, Thomas C. Irving, Weikang Ma, Bertrand C.W. Tanner, "The structural and functional effects of myosin regulatory light chain phosphorylation are amplified by increases in sarcomere length and [Ca[superscript 2+]]," J. Physiol-London 602 (19), 4941-4958 (2024). DOI: 10.1113/JP286802 Cited 1 times

Yanhong Wang, Luca Fusi, Jesus G. Ovejero, Cameron Hill, Samina Juma, Flair Paradine Cullup, Andrea Ghisleni, So-Jin Park-Holohan, Weikang Ma, Thomas Irving, Theyencheri Narayanan, Malcolm Irving, Elisabetta Brunello, "Load-dependence of the activation of myosin filaments in heart muscle," J. Physiol-London 602 (24), 6889-6907 (2024). DOI: 10.1113/JP287434

Zhengrui Zhang, Jiaqi Fu, Johannes G. Matthias Rack, Chuang Li, Jim Voorneveld, Dmitri V. Filippov, Ivan Ahel, Zhao-Qing Luo, Chittaranjan Das, "Legionella metaeffector MavL reverses ubiquitin ADP-ribosylation via a conserved arginine-specific macrodomain," Nat. Commun. 15, 2452 (2024). DOI: 10.1038/s41467-024-46649-2 Cited 7 times

Jing Zhao, Lin Qi, Shengyao Yuan, Thomas C. Irving, Weikang Ma, "Differences in thick filament activation in fast rodent skeletal muscle and slow porcine cardiac muscle," J. Phys. B 602 (12), 2751-2762 (2024). DOI: 10.1113/JP286072 Cited 1 times

Marloes van den Berg, Zhonghua Shi, Wout J. Claassen, Pleuni Hooijman, Christopher T.A. Lewis, Jesper L. Andersen, Robert J. van der Pijl, Sylvia J.P. Bogaards, Stefan Conijn, Eva L. Peters, Leon P.L. Begthel, Bas Uijterwijk, Johan Lindqvist, Paul R. Langlais, Armand R.J. Girbes, Sandra Stapel, Henk Granzier, Kenneth S. Campbell, Weikang Ma, Thomas Irving, Darren T. Hwee, James J. Hartman, Fady I. Malik, Marindus Paul, Albertus Beishuizen, Julien Ochala, Leo Heunks, Coen A.C. Ottenheijm, "Super-relaxed myosins contribute to respiratory muscle hibernation in mechanically ventilated patients," Sci. Transl. Med. 16 (758), eadg3894 (2024). DOI: 10.1126/scitranslmed.adg3894

Zhanwen Du, Han Wang, Shuqi Luo, Zixi Yun, Chen Wu, Wangfei Yang, Matthias Buck, Wenwei Zheng, Alexandar L. Hansen, Hung-Ying Kao, Sichun Yang, "The sequence–structure–function relationship of intrinsic ER[alpha] disorder," Nature 638, 1130-1138 (2025). DOI: 10.1038/s41586-024-08400-1

Robert C. Monsen, T. Michael Sabo, Robert Gray, Jesse B. Hopkins, Jonathan B. Chaires, "Early events in G-quadruplex folding captured by time-resolved small-angle X-ray scattering," Nucleic Acids Res. 53 (3), gkaf043 (2025). DOI: 10.1093/nar/gkaf043

Robbert J. Van der Pijl, Weikang Ma, Christopher T.A. Lewis, Line Haar, Amalie Buhl, Gerrie P. Farman, Marcus Rhodehamel, Vivek P. Jani, O. Lynne Nelson, Chengxin Zhang, Henk Granzier, Julien Ochala, "Increased cardiac myosin super-relaxation as an energy saving mechanism in hibernating grizzly bears," Mol. Metabolism 92, 102084 (2025). DOI: 10.1016/j.molmet.2024.102084


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